Microarray Probes on PGSC0003DMT400028754
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2044_PI426222305 |
JHI_St_60k_v1 |
GCTCAAGATTTATTCCTGTTGATAGATTATCTCAGGGCTTATACTAGTCCCTCTAAGTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400028754
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400028754 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084820.1 |
+1 |
0.0 |
568 |
276/311 (89%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:63543483-63547030 transcript_region:SL2.50ch10:63543483..63547030- go_terms:GO:0008270 functional_description:Palmitoyltransferase PFA4 (AHRD V1 ***- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type |
| TAIR PP10 |
AT3G09320.1 |
+1 |
1e-139 |
408 |
186/310 (60%) |
DHHC-type zinc finger family protein | chr3:2862142-2864113 REVERSE LENGTH=286 |
Transcript Sequence (1533 bp)
>PGSC0003DMT400028754 1533 pgsc_dm_v3.4
CAAAAGTGTTAAAAAAGTTAAGACCAACCGGACATTTTCTGATAAGTAATAAAAGAAACT
TCATGAACCCAAAAACCAAACAAGCCCTTACTTGTACTCCTCTAGATCCAAACCCCACCG
TTAAATTCTCGCCGGCGGTGATCCTTCCGACGTCGGGAAATGAAACGTGGCAGCGGATTC
TCGTTCCACGTCACCGTCGTCATAGCCGCCATTGCATTCATATACTTCTCAACGGTGTTC
GTCTTCATTGATCAGTGGTTTGGGATTTGGTCGTCCCCTGGAATGCTTAACGCGGTCTTC
TTCACCGTCGTTGCTGTTATGTGCATTTCCAATTATGCCCTTGCCATCTACACCGATCCG
GGTCAGGTTCCTAGCTCATTTGTACCCGACGTTGAAGACCCTGATAATATTGTTCATGAG
ATCAAACGGAAGGGTGGGGATTTGAGATACTGCCAAAAGTGTTCCCTTTATAAGCCTCCA
CGTGCTCATCATTGTCGTATATGTAACAGATGTATACTACGAATGGATCATCATTGCGTG
TGGATGAATAATTGTGTGGGCCATGCGAACTACAAGATCTTCTTCATCTTTGTTATGTAT
GCTGTTGTTGCTTGCATATATTCCTTGGTTTTACTTGCTGGTAGCATAACCATAGACTCT
CCAAAGGATGACCAGCTAAGTGAAGGCTCTTACAGAGTTGTATATGTAATTTCCCATGAA
TATTTTTTGTTCTTTAGTAACTTTTCATTTGTCAATTTGCTCAAGATTTATTCCTGTTGA
TAGATTATCTCAGGGCTTATACTAGTCCCTCTAAGTTTGGCACTGGGCTTTTTCCTGTGT
TGGCATTTTTACCTGATTTTGCAAAACAAAACAACAATTGAGTACCAAGAAGGTGTTAGA
GCGATGTGCGTTGCTGAAAAGGGAGGTTATGTCTATTCACATCCATATGATCTTGGTGCA
TACGAGAATTTGATAGCAGTTCTAGGTCCAAATGTCCTTTACTGGCTGTTGCCCTCCACA
AAACATATAGACTCTGGCCTTCGTTTTCGGACATCATTTGATAACGTACCGAGGACGCCT
GTATCAAAATGAAATGTTTCTTCTTACAGCAGAGATGTAAAGTGTTTGATCACCAAAGCA
GTTCGGTGCAGCTGTGTAAGTCTAGCTTTTACCTTGTAAAGTAGCAGCTCCACTCTTCGT
GTTGCCAAATGATACAACATGGAGGCAGTCATCAACTTTTTTGTATTCTAACAGTTGTAA
GAGATGTTCAGTCCTCCATCGGCGGTCGCACTGTAGTCGAAGGTAACTAGAGAATTGAAG
CAGTTGGACATAGGATACTAGCATTGTTCATAGTTGTGGCATTATTTACGTGATGTACAA
AAAGAAGTTCCCTTTACAAGCTAACTTAGAGCATTGTGCTGTAGCTCAAATGGTTGTAAA
TTGTAATACATGCAAATTGCAACTACATAATGAGTTAATGTTACCTGTAATGTTTAATTT
TTTACAAGTTTTGTTAGACAGACACATTTTCTT
