Microarray Probes on PGSC0003DMT400028717
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2045_PI426222305 |
JHI_St_60k_v1 |
CAGGATGTTGAGGTCCGAATTAGGCTCACTCTTTGATTATAAAGATCTTGTAGTAACGGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400028717
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400028717 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084430.1 |
+1 |
6e-52 |
175 |
95/111 (86%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:63296174-63297477 transcript_region:SL2.50ch10:63296174..63297477- go_terms:GO:0008270 functional_description:RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type |
| TAIR PP10 |
AT5G02750.1 |
+1 |
1e-33 |
126 |
50/72 (69%) |
RING/U-box superfamily protein | chr5:620101-620952 FORWARD LENGTH=283 |
Transcript Sequence (869 bp)
>PGSC0003DMT400028717 869 pgsc_dm_v3.4
AAAATGTTGTACTCCTTGACATAGTTAAAAAGAATCTTTGAGTAACACAACATGTTCAAA
ATCCTAATATTTTTTCATTTTCTTGTTAGAATTTCTAACTCCGTCACTGGTAATGATGAT
GAACGTAAAGACAAGAAGATGTTAGCGGCATCCGTGGCGGTGGTGGTGTCGTTGCCGTCA
TCTAACGGTGGTGGAGATGATCAATGTGTGATATGTAAAGAAGACATGAAATTAGGGAGA
GATGTTTGTAAATTACCATGTGATCATTTTTACCATTGGAAATGTATATTGCCTTGGTTG
AAGAAGACAAACACTTGTCCATGTTGTCGGTTTCAGTTACCGTCAGATGATGTTTTTGCT
GAGATCCAACGGTTGTGGGATGTTCTGGCTAAGATTAGTGGTGGTGCCACGTAGTTAATT
AATTGCAGCCAGAAAATTAAATTAGTGGATTAAATTGTAGTAGCTATCTTTTTCAGCTTA
TCAATAATCCAAAAAAATATCTGTACAAAATTTATTGTTACAAGTGGAGTACTCTTTTTT
CCACTTAGAACACGTGGCAAATGCATAGATATACATGTTTTGTCTTAGTCAATCATGAGT
TGTGGACTTAGACGGAAAGCACGACACGAATCGCAAGCGCGTAAGCATAGGTTTTTTGTT
TCAGCCTTCTTTAGCCACTTTCGAATCTATCGTATTCAGAAAAGCTTGTTTCGTGCCGAA
ACATTTAGCAATGTCAGCAGATTGGTGAGGGCTGGGTGTCTGAGGATAGGTTAAGGCAGA
GCCTACTGGACTTAAAATACCATGAGCAGCAGGATGTTGAGGTCCGAATTAGGCTCACTC
TTTGATTATAAAGATCTTGTAGTAACGGA
