Microarray Probes on PGSC0003DMT400028623
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2097_PI426222305 |
JHI_St_60k_v1 |
GGAGCGTGTACTATTTCATGGCCTGCTTTATAGTGTGTTATATCGAATTTATTATGTAGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400028623
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400028623 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g085030.1 |
+1 |
2e-122 |
354 |
190/200 (95%) |
evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch10 gene_region:63683478-63684077 transcript_region:SL2.50ch10:63683478..63684077+ go_terms:GO:0005488 functional_description:Soul heme-binding family protein (AHRD V1 **** D7LKR5_ARALY); contains Interpro domain(s) IPR006917 SOUL haem-binding protein |
| TAIR PP10 |
AT2G37970.1 |
+1 |
7e-81 |
249 |
134/215 (62%) |
SOUL heme-binding family protein | chr2:15891027-15891704 FORWARD LENGTH=225 |
Transcript Sequence (1046 bp)
>PGSC0003DMT400028623 1046 pgsc_dm_v3.4
CTCGGAGTACGTATTTTCTTCCAATGCAAGCAAACAAGTAATCGTGGCAAAACTAACTCC
ACACAACCTATTTCTTCTTTTCCCGCTCATCAACCACCATTCATTTTGCAGCAATCGAAA
TTCGAAACCCCTTTCCCCAGTCCTTTTTGCCGGCTCTTCAAACTTCTACGGAAACTTCCT
TTTTCTTCATTATAAGTAGCAATTCACAGCAACTTTTACTATCAACATTCTCAATTTACA
TTTTGCAAAGAACTAAAAAAAAATCCAGAAATTTTCTCTAAAATGGGTATTGTTTTCGGA
AAGATCTGTGTTGAAACACCGAAATACGAATCAATTCAATCTACAGCAGATTACGAAATC
CGCAAATACCCAGCAGCTGTTATAGCACAAGTCACATACGATCCGATCCAGTTCAAAGGC
GACAAAGACGGTGGATTCAAACTACTAACCAATTACATCGGAATATTCGGTAATCCCCAA
AACTCAAATCCTGAAAAAATCGCCATGACAACCCCTGTAATCACCAAATCGTCTGAGAAA
ATCGCGATGACTACACCGGTGGTGACTAAGAGCGATGACGGAGAGAAGAATACGGTGACT
ATGCAGTTTATTTTGCCGGCGACGTATACGAAAGGTGAAGAGGCACCGAAGCCGTTGGAT
GAGAGAGTGGTGATTGTAGAAGAAGGGGAAAGGAAGTATGGGGTGATGAAGTTTGGTGGG
ACTGCAAGTGATAAAATAGTGAAAGAAAAAGTGGAGAATTTGAAGAAATTGTTGGAGAGA
GATGGGTGTAAGATAATTGGGGAATTTGAATTGGCTAGGTATAATCCGACATGGATATTG
CCTCCATTTAAGACCAATGAAGTTAGGATTCCAGTTGAGTGAAGCTGAAACGTATTGTAT
ATGAGCTGTATACTTTGTATATCAGACTGTATTAAGGTTGGGAGCGTGTACTATTTCATG
GCCTGCTTTATAGTGTGTTATATCGAATTTATTATGTAGTTCTTGTTTATTTGCTTTTAT
TAATAGAGATCCAAATTCTATGCAGC
