Microarray Probes on PGSC0003DMT400027159
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2072_PI426222305 |
JHI_St_60k_v1 |
CATTTCCTTCTTCTGTTAAAGCAGTACTTCCTCATCATCATCAAGAACTTCAAACAACAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400027159
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400027159 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084180.1 |
+2 |
0.0 |
809 |
472/499 (95%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:63159261-63161247 transcript_region:SL2.50ch10:63159261..63161247- go_terms:GO:0005515,GO:0003700 functional_description:C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU4_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type |
| TAIR PP10 |
AT5G03150.1 |
+2 |
2e-110 |
344 |
249/519 (48%) |
C2H2-like zinc finger protein | chr5:745849-748678 FORWARD LENGTH=503 |
Transcript Sequence (1863 bp)
>PGSC0003DMT400027159 1863 pgsc_dm_v3.4
TTTTAAGATTTACACAACTTTGTGTTTTTCTTTGTGTTGTTATTGTGTGCTACTACTACT
ACTACTACTTATGTTTGTGTTCTTTTGGCACAATCTAAACAAAAAAAAACTTGTGAGATT
TGAATACTACCAAGGTTTTCTTAACTGTTTGTATTTGGAAAAAAACACACACTTTGTTTT
GTAGCTTAGACACAAAACCAAAACATTAACAAAAATGATGTCTGGAGATGTGTTTTCATT
TCCTTCTTCTGTTAAAGCAGTACTTCCTCATCATCATCAAGAACTTCAAACAACAAACCC
TAACCCTAAACCTAATACTTCTTCAAAGAAAAGAAGAAATCTTCCAGGAACACCAGATCC
AGATGCTGAAGTTATTGCACTTTCACCAAAGTCACTCATGGCAACAAACAGATTCATATG
TGAGATTTGCAACAAAGGTTTTCAAAGGGACCAGAATTTGCAACTTCATAGAAGAGGACA
CAATCTTCCATGGAAGCTAAAGCAAAGAAACAAGCTAGAACAAGTGAAGAAGAAAGTGTA
TATTTGTCCAGAAAAGACATGTATTCACCACGATCCATCGCGTGCACTTGGAGACCTAAC
TGGAATTAAGAAACATTTTAGTAGAAAACATGGAGAAAAGAAGTGGAAATGTGAAAAATG
TTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCATAGTAAAACTTGTGGAACTAG
AGAGTACAAATGTGACTGTGGCACACTCTTTTCAAGAAAAGACAGTTTTATCACACACAG
AGCTTTCTGTGATGCTTTAGCTGAGGAGAGTTCAAGAATCACATCAGTTGGGGCTACCAA
TTTGATCAACTTCCCAAATAATGTCACATTGTTGAACCAACAACAATCAAATTTACATGG
CGGATTCGCAGGATTTAGATCAGATTTTGGTAGTTACACAACTGGTAATAATAATAATTC
TCTTCATCAGCATCAGCATCAGCAGCAACAGCAAAAACCAAGATTATCACTTTGGTTAGA
TCAACAAGCAGCTCAAATATCGTCAAGTTCAAATCTTTTTGACAATTCAAGCACAGGGGG
TTTTCAAGAAATGATCCAAATGCAATCCCAAAATGTATTTGGATCATCTAATTCAACATC
TGCAAACTTTTCAATGGCTGAAGCATACAATTCTCTGTATTCCGATAGTCAAAACAGCCA
ATTAACCAAACAAAATTCGACCACGCCAATGTCTGCTACTGCACTTCTACAGAAAGCAGC
ACAAATGGGTTCTACAAAAAGCAATCAGTCAACTTTCTTTAGCAACAATTTCAGCAAACT
GAACTCTTCTTCTTCATCCTCCCCAAATACACCAACTTTTACCAGTTTACAGAGTTGTGA
AACAACAGATCAAATTTTCGCCAAGAAATCTGAAGATTACACAACGTCGTTGTTACACAG
CAACAACGGGCTAATTGGGTGTCCGAATTTTACTTCTTCAGGGATTAATAAAGCGATTAA
TTTGGATGAGGCAATTATGCAAACAGTTGGTATGCATAGTACTCAAGCAGTTTCAATGAA
CGGTATGGATAATTGTTTGACGAGAGATTTTTTGGGAATTAAACACGAAGGGAATTGTCA
GTTTTTGCCACAAGAGATTATTAAGTTTGCATCGATGAATAGTTCAGCTATGGGGTTAAG
CCATTTACAGTAAACAGTTAGTCACTTAGCAATGGCGTCTGTCTTTTCATATATATTTTT
GTATTTCGCAGTACAATAATGTAAAATGCTAAATTATCTTACAACTGTTGTAGCCCCAGC
TAAGCCTATTGTTAACTAACTTTATCGATCTAACAGTATAACTCTTGAGTTGTTCCCTTT
AAA
