Microarray Probes on PGSC0003DMT400027148
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2086_PI426222305 |
JHI_St_60k_v1 |
ACCGTAAGAAGTCCTATAGTAGTTGCTCCAGCGCTTGATGCCCCAAATGAAAATGATTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400027148
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400027148 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084320.1 |
+1 |
0.0 |
1342 |
665/702 (95%) |
evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch10 gene_region:63240593-63242908 transcript_region:SL2.50ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related |
| TAIR PP10 |
AT5G67090.1 |
+1 |
2e-176 |
526 |
307/717 (43%) |
Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736 |
Transcript Sequence (2106 bp)
>PGSC0003DMT400027148 2106 pgsc_dm_v3.4
CTTCTTTATTCTTATGACAATGTGCTTCATGGATTCAGTGCTGTTTTGTCTAAAGATGAA
TTTGAAGCTCTCAAGAAGTCACCAGGCTTTCTTTCAGCTTATAAAGATAGGCCTGTTGAA
GCTCACACTACACATTCCCCTGAGTTTCTTAAGCTTAATCCTGCTTCTGGGCTATGGCCG
GCGTCTGGTTTTGGTGAAGATGTGATTATCGGAGTACTCGACACTGGTGTCTGGCCAGAA
TCTGCTAGTTTCAGAGATGATGGACTATCTGCAATACCAAAAAAGTGGAAGGGAATTTGT
AAGCCAGGAACAGATTTCAATTCTTCTTTATGCAACAGGAAACTCATTGGGGCGAATTAT
TTCAATAAGGGGCTTTTGGCTAGTGATCCTACTATTGTTCTTTCCATGAATTCTGCAAGG
GATATGAGAGGTCATGGCACTCATGTTGCTTCCATTGCTGCTGGTAGTTCTGTTAAAGGA
GTTTCATATTTTGGATATGCTCCTGGAACAGCAAGAGGTATTGCGCCACAAGCTAGGATT
GCTGTATATAAGTTTAGCTTTGAAGAAGGGACCGTCACTTCTGATTTAATTGCTGCTATG
GACCAAGCTGTTGCAGATGGCGTTGACATACTATCAATTTCTTATGGGTATGGTTTTGGT
CCATTGTATGAAGATTCTATTGCAATAGCTTCTTTTGGTGCCATGATGAAGGGTGTGTTA
GTCTCTGCTTCAGCTGGGAATAATGGTCCTGAAATGGGAACTTTATCCAATGGAGTCCCC
TGGATCTTTACTGTGGCATCAGGCAGTACTGACCGATCATTTTCCGGGACTATAACTTTT
GGGAATGGCTTAAAGATTACTGGATTTAGCTTGTTTCCAGTGAGAACCACCATAAAGGAT
TTTGATTTGGTTTACAATGACAGCTTATCCGCTTGTGAGTCATCTGATGATTTAGCCCAA
GTCCCTAATAAAGCACGTAGCATCACGATGTGTTATAGCACTGCACAAGAAGACTTATCA
GTCTCTGATCAAATGGGGGCTATCTCAGAGGCAAAATTTGGTGGCGCACTCTATGTTTAT
GGAGATCCGGATGTATTGACATCCAATTATTTTACGAATCCTGGAGCTGTAATTAGCAGC
AAGGATTGGGAAAAGGTGGTAGACTATGCAAAAACAAGTGCTAAACCAAAAGTCAGCATC
AGTTTCCAGGAAACACATTTTGCTGTTAAGCCTGCTCCAGTTGTTTCTGCATTTTCCTCG
AGAGGCCCCTCCCTAAGCTATCTACGAGTTGCAAAGCCAGATATTATGGCACCAGGGGAG
TTAATTTTAGCAGCCTGGCCATCGAACACTTCAGCTGCAATCATTGGTGTCAATACATTT
TTGGATAGTGATTACAGGCTTCTTTCAGGCACTTCGATGGCTGCTCCTCACATTTCCGGA
ATTGCTGCAATGCTAAAAGGAGTACATCCTGATTGGAGTCCTTCAGCTATTCGATCTGCC
ATGATGACCACTGCAAGCCCTTTGGATAATACTGAAAAGCCCATCAAGACCATGGATTAC
CTCAGAACCAATTATGCTACATCTTTATCCATGGGAGCTGGACTTGTTGATCCAAACCGT
GCAGTTGATCCAGGCCTGATATATGATGCAACTCCACAAGACTACGTGAATCTTCTCTGC
TCCATGAATTTCACAGAAAAGCAGTTCAAGACAATTGCTAGATCATCAGCTAAGCACAAC
TGTGCAAATCCATCCGATGATATCAATTACCCATCATTTATTGCTCTCTATATCCCAAAT
GGGGACTATGCTTGGTTGGAGCAGAAATTCACGAGGACAGTCACAAATGTTGGACCCGGT
GCAGCTAAGTACAAAGTAAAAGTGAAAGCACCAATAAACTCGACAATTTCTATCTCTCCA
CAGACCTTGGTGTTTGAGAAAAAACATCAGAAGCAGGACTACACTCTTACCATACGTTAC
AGAGGCATTGAATTTGACCAAGCACAATCTGGTTCAATCACTTGGGTGGAAAAGAACGGT
CATCACACCGTAAGAAGTCCTATAGTAGTTGCTCCAGCGCTTGATGCCCCAAATGAAAAT
GATTGA
