Microarray Probes on PGSC0003DMT400027132
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2359_PI426222305 |
JHI_St_60k_v1 |
TCAAAACTATGGCAGATGAAGGTTTGGTTTCTCATAAAAGAGACCCCATCAAAGCTTCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400027132
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400027132 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084270.1 |
+1 |
0.0 |
551 |
312/322 (97%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:63212066-63219689 transcript_region:SL2.50ch10:63212066..63219689+ go_terms:GO:0005488 functional_description:Importin alpha-2 subunit (AHRD V1 ***- B6SUZ9_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical |
| TAIR PP10 |
AT5G03070.1 |
+1 |
2e-139 |
413 |
230/322 (71%) |
importin alpha isoform 9 | chr5:718468-721395 REVERSE LENGTH=519 |
Transcript Sequence (1298 bp)
>PGSC0003DMT400027132 1298 pgsc_dm_v3.4
AAAAAATACAAAAACAACAGAAAAAAAGAAAAAGAAAACACAATAGGAAAAACGCACCCA
ACTATACCTAGCTGGAATTCAATTTTCCCAAAAATTCATCGTTAAATTGAGTGCAAGATA
TGTTTCATTTTCTTAAAAAACCCAAAGATTTTGGTACTTCAAGAACCCTACTTCTCGTTT
AATTCAAAAAAGTTATCATATTTTCTGCTATTGACGAAATCCCCCATTTGAAGAGTTCAT
TGGGCAATCAAAACTATGGCAGATGAAGGTTTGGTTTCTCATAAAAGAGACCCCATCAAA
GCTTCAGTTGGCAATGCTGCAGCACAGCGAAGACGGCAACATGCTGTTACAGTGGGGAAG
GAAAGGAGAGAAGCCCTGATGCGTACAAAGCGGCTATGCAGAGTGGGAGTTAGTGGTGAT
TTTGATGAGGCCTCTATTGATGATAGTGATATGATGATTGAAGAAGATCAAGCAATTTTG
GAGGCCTTGACTTCGGCAGCTGTGGAAGAATTAAAACTTGATGTTGCCTACCAGGGTAAA
GGGGCAACAGAGAAAAGGGTGAATGCTCTTCGTGAGCTGAGACGCTTTCTCTCTAGGTCG
GAATTCCCTCCTGTTGAAGCTGCCCTACAGGCTGGAGCTATACCTCTTCTTATTCAGTGT
CTTTCATTTGGCTCTCCAGATGAACAGTTGCTTGAGGCTGCTTGGTGCCTAACTAATATT
GCTGCTGGAAAACCCGAGGAAACCAAAGCTTTGTTGCCTGCATTACCATTGCTTGTGGCT
CATCTAGGAGAGAAGAGTTCCTTACATGTCGTGGAGCAGTGTGCATGGGCATTGGGAAAT
GTTGCTGGTGAAAGTGAAGAGCTGAGAAATGTTCTCCTATTACAAGGAGCCTTACCAGCT
CTTGCAAGGATGCTGCTGCCTAACAAGAGGTCAACAGTGAGAACAGCTGCTTGGGCATTA
TCAAACCTAATCAAGGGACCAGATCCTAGAGCTGCAACAGAGTTGATAAAAATTGATGGA
ATACCTGATAGAATTGTTCGACATTTAAAGAAAGGGGATGATGAGTTGGCCACTGAAGTA
GCATGGGTTGTTGTGTATCTCACTGCCCTTTCAAATGTTGCAACTACAATACTGGCAAAG
AGTGATCTCGTACAAGTACTGGTAGAAATATTGGACATGTCAACTAGTCTGCAACTGCTT
ATCCCGGTAACATGCACACTAATATTATGGGTTTGGTGGATTTATGTTACCAGAAAGATT
CTTATTATTTGTACTTGCTGAGCTTTGAGAACAATCAC
