Microarray Probes on PGSC0003DMT400027128
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2029_PI426222305 |
JHI_St_60k_v1 |
TGAAAATCCCCTGCCTATTCAAGACTCTCTGACATCAGTTGAATCAGAAATCATTCTTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400027128
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400027128 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084230.1 |
+1 |
2e-99 |
294 |
161/211 (76%) |
evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch10 gene_region:63185291-63186107 transcript_region:SL2.50ch10:63185291..63186107+ functional_description:Unknown Protein (AHRD V1) |
| TAIR PP10 |
AT2G42760.1 |
+1 |
1e-20 |
89 |
72/211 (34%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267 |
Transcript Sequence (894 bp)
>PGSC0003DMT400027128 894 pgsc_dm_v3.4
TTTTAAGTTGATTCCAATAAAAGATACCTTCTCTACCCCTTCAAATTCACATTAATTCCT
CTAACTTCATTCATCCTTGTCTTGATAACCATGGAAGAAAAATATAGTATAGGTTTGTTA
GGTATAATGGATCAATTATGGTTTCATCAAATTATTCTCTTTTCAAAACCCCCATCAATT
TCATTCCCTAAAAATCTTGAAAATCCCCTGCCTATTCAAGACTCTCTGACATCAGTTGAA
TCAGAAATCATTCTTCTACAGGATGTTTGTGAAAAAGAAGAAGACAATGAGAAGGAAAGA
CCAACAAGAAACATGTCTCATTCATTATCACCTAAAAAATATTCAAGAAACAGAGTATTG
GAGAAAACACTGAGTAATTACAAGAGTCTTGGAGATCTCGAGCTTGAAGAATTACGAGGT
TTCATGGATTTAGGATTCATATTCCGCAAAGAACATATAAGCAAGAGAATGATAAATGTA
ATTCCTGGATTACAGAGGCTTGAAATAGAGATATCCGAAGACGAAGAAAAAAATTGTGAA
AATTCAAATTCAAAAGCAATTGTAGTAGAAGGAGAAGAAGAAGATGATAAAAGGGAAATT
GCACGACCTTATTTGTCAGAGGCATGGCTTATTAAAAGGCCTAATTCACCATTGTTGAAT
ATGAGGATACCAAGAATTTCTGCAGCTTCTGATATGAAGAAACATTTGAGATATTGGGCT
AAAACAGTTGCAACTGTGGTTATGCAAGAATCTTGATTTTGTGTATAGAGTATCTGGGTT
GATTTCTCAGATGATCATTCAATTAACTGTTATTATCTCATAAAGTTATTTTCTAAAACT
TATATTGTTTAAACATATTGCATTCATCAACCAAATATAAGATATGATTGGAAT
