Microarray Probes on PGSC0003DMT400025953
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1389_PI426222305 |
JHI_St_60k_v1 |
TTGGTTTGGGATTGTAACAATTGAATTTGAAGCAATGTGAACAGGTGAATAAGATCTTCG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400025953
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400025953 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g090540.2 |
+3 |
3e-154 |
439 |
240/250 (96%) |
genomic_reference:SL2.50ch02 gene_region:46644757-46646996 transcript_region:SL2.50ch02:46644757..46646996- go_terms:GO:0050327 functional_description:Short-chain dehydrogenase/reductase family protein (AHRD V1 **** D7LTG0_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase |
| TAIR PP10 |
AT3G50560.1 |
+3 |
8e-105 |
314 |
171/268 (64%) |
NAD(P)-binding Rossmann-fold superfamily protein | chr3:18761247-18763835 REVERSE LENGTH=272 |
Transcript Sequence (1169 bp)
>PGSC0003DMT400025953 1169 pgsc_dm_v3.4
GGGACTATAGTTGACAGCAGCGCAATCATTAGGAAATAAGTGTGAGCGTCCTAGTCCATA
CTTTCTATATACCTAATTTAGAAAAGAAGGTTCATCCAATTATACTATACAGTTTATTGC
CTCTTCCATAGGAAGCAGCAAAATTCAGAAAGCGACACAAAATTCCCCCACAATATATAT
ACGTATACACATACATACGGTGGTTTAAATTCCTTCAACACAAAGAAACTTTTTGAGCTG
AATCGCACCTGCATTTCATTAATTAGAAGATGCGGACCATGGCGAGTTCCGTCTCATCCA
GAGGCATAGCCGCCATTGTGGGCGTTGGGCCTAATCTTGGACGCTCCATCGCTCGCAAGT
TCGCCCATGAAGGTTATACAGTTGCTATACTCGCCCGTGACTTGGATAGATTATCTAGAT
TTGCTGATGAGATAGCGAGAGAAGAGAAGGCGCAGGTATTTGCTATCCGAATCGATTGCT
CCGATTTACGAAGCGTTCGAGAGGCATTTGAGGGAGTTCTATCACTGGGTTTTGTGGAAG
TCTTGGTTTACAATGCATATCAGCCAGTATCTTGGAATCCCACTAATTTTACTGACATTA
AAGTCGAACAATTTGAAAAATCTATCGCCGTCTCCTCCGTCGGCGCCTTCCACTGCGCTC
AACAGGTAGTACCAGGAATGGTGGAAAGAGGAAGAGGGACGATTCTGTTTAGTGGTTGCT
CAGCTTCTCTTAATGGCATTGCCGGCTACTCCGAATTATGCTGTGGAAAGTTTGCAATGA
GAGGGTTATCCGAATGTCTGGCAAGAGAGTTCCAGCCACTTGGAATACACGTGGCACATG
TCATCATCCACGGCATCGTCGGGGCACCTCGGGGGGCAATGTTATCCAATTCACAGCAAA
GCGTACGAAGGGATGGATTGATGGACCCGGACGCGCTGGCCCAGACCTACTGGTACTTGC
ACATTCAAGATAGATCTGCTTGGACCCAAGAGATTGATCTACATCCTTTCAACCAAAGAG
ATATGTAGAAACAAGAATATGTACTGCTATAATAAGTTAGATATTTTCAATTTAGTGTGG
TATTGTATGATGATTGATTGGGATTTGATTTGGTTTGGGATTGTAACAATTGAATTTGAA
GCAATGTGAACAGGTGAATAAGATCTTCG
