Microarray Probes on PGSC0003DMT400022914
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5629_PI426222305 |
JHI_St_60k_v1 |
TGCCATTTGTACTTCTAACATTTGAGTATGAGTTATTCCCTTCCATATATGGTCTCTCAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400022914
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400022914 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G52870.1 |
+1 |
2e-76 |
257 |
147/247 (60%) |
IQ calmodulin-binding motif family protein | chr3:19593365-19595686 REVERSE LENGTH=456 |
Transcript Sequence (2328 bp)
>PGSC0003DMT400022914 2328 pgsc_dm_v3.4
GAAAAAACGCAGTCTATATATATAATATATACACACAAACTCCGTCCCACTCATTTCATT
CTCCGGCGACTATTTCTCTCTCTACAACTCTCTCTCTCTAAAACTCACTGGACTTCGTTC
GTTGTCCGAATCTCAAGGCCTTTTGTAGAGCAGAAGCAGTTATTGACCGAATCTCTCTCA
ATGGAAGTCGAAACTACCGGCGTGCCAAATTTTGATCTCACAAACTCTTCCTCACAGGTT
AGTTCTATTCCTCCGTATAGAAAACTCATTGACATGTCGGCTTGTAAACTGACGGAGCTC
CGTATTCCCGATTTTCGGAGCTCCGACGACATGCCGGAACTCGAAGGATTTGGTTCGCCG
GTTTCTGCTGGTGTAGAATGTGAAAACGGTATGGTTTCGTTTCCGGGGTCTCCTTCTGTA
TCTGAAAATGGAGGCCGGGAATGTGATTTTTCTGAGTTCGTTGAAAAGACGCCGTCGAAT
GCCGCGAAGAGATTGCAGAAAGTTTATCGGAGTTATCGTACACGGCGTATGTTAGCTGAC
TCTGCTGTGGTAGCTGAAGAGCTTTGGTGGCAAGCAATAGATTATGCTCGGTTGAATCAC
AGTACAATTTCATTCTTCGATTACTCGAAGCCGGAGACGGCAGTTTCACGGTGGAATCGC
GTCAGCTTGAATGCTTCTAAGGTTGGTAAAGGTCTATCCAAAGATGCTGAAGCTCAGATA
TTAGCTTTTCAACACTGGATTGAGGCTATTGATCCACGCCATCGATATGGACATAACATG
CATATCTATTATGAAGAATGGTGTAAAACTGATGCTGGCCAGCCCTTCTTCTTTTGGTAA
GGAGGCAGAATGCTGAAACTTGTATCACATGCATTGTCTCAAATGTAAATCTTCAGGTTG
TCAAAGTCTATATCCTCCAAAAGTAGTGCATTTTTGGAGTACCTGTCATGGGTGTAACAA
CATTTTCGAGAGTTAGAACAACATAGACTTTGACGACTTGAAGATTTACATTTGAGACAA
TGCATGTGATACCAGTTAAACGTTATAAGCTTTAGTCTGGGTAGCTTAGAATGACTAGGT
ATGTGCAGGTTGGATCTTGGAGATGGCAGAAAGGTTGATCTCAAAGAATGTCCAAGAGCT
AAGCTTCAGAAACAATGCATCAAGTATCTTGGACCTGTATGCGCTGAATCTTTTGTTACT
TATGATCTACATATCACGTAGTTTAGCATCAATCACGCACTGCAACACACATATGTCCAC
TAAAATACTTGCACCAACAGCTCCGTCATACACGATCTAGCTTGATTCCTTGTTATGCAT
GTCCCATTACCTGATATTAGCACACAACTCCTAACTGTTCCTTCTTTACCTTTTTGTAAT
CAGCAAGAAAGACAACATTATGAGTACATAATTGCTGGCGGGCAAATACTGCATAAGCTA
ACCGGAAGTTTTCTTGACACAACTAAAGGCCCCGATGGGGCAAAATGGATCTTTGTGATG
AGCACATCAAAAAGACTCTATGCTGGTGAGAAAAAGAAAGGAATGTTTCATCATTCCAGT
TTTTTGGCTGGTGGGGCTGCTTTAGCTGCTGGAAGACTCGTGGTACAGGATGGGACAGTG
AAGTCTATTTCACCTTACAGTGGCCATTACCGCCCATCAGATGATAGCCTCGAAACCTTT
TTATCGATTCTCAAGGAACACGGAGTCAACGTGGATGAAGTTGAGATAAAAAAGGCAAAT
GAAGACTATGACACCTCCGGAGATGTAAATGTAAATGTAAAATCTGTTGACAAACGTCCG
CCAAAACTTTCAACTCCTCCACAAGCAGTGAAAGAAGAGAAGAAAGAATCAATTGGATCA
CCACAAGCTGCAACTAGCTGCTACCAGAGAACGCTCTCAGGCGGTCTTCACAGCCCGAGA
ACAGAAGTGCCAAAGACTGCTATACTAGAAAGGATCAATTCCAAGAAATCATCAAGATCA
TATCAACTTGGCCATCAACTATCTCGAGTATGGTCAACAGGCGCCGGTCCAAGAATTGGC
TGCATTGCCGATTACCCTGCTGAACTAAGATGGCAAGCCTTGGAACTAACTAATGTTTCA
CCTAAACCTTCTCCATCATCTACTCCTAGACCTTTAGACGCTGTTTGTTCGCCTACTTGT
TCTTCCCCAGTTTTCAACAATGTACTTGTAAAGTCTTCTTGAACTCCAAGTCTTTTTTTC
CTTCTTAAATTCCATGTTCCTGCTACAATATACTCTAGCAAGTGTAAATGCCATTTGTAC
TTCTAACATTTGAGTATGAGTTATTCCCTTCCATATATGGTCTCTCAT
