Microarray Probes on PGSC0003DMT400022422
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_25533_PI426222305 |
JHI_St_60k_v1 |
GGTCTTATGTATGTCCTCAAAATCTGTCAATATGTGTATGTAATTTGCAAGCTCTTCAGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400022422
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400022422 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G55960.1 |
+1 |
0.0 |
800 |
409/646 (63%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22662726-22664762 FORWARD LENGTH=648 |
Transcript Sequence (2481 bp)
>PGSC0003DMT400022422 2481 pgsc_dm_v3.4
TTACTCTGCAACTTGTGTTGTCAGCATATTGTTGATTCTCCTGAAAAATTCCAACGTTCT
TTCTTTGTTAGATTCCAAATTTTCTTGGAATTCAGTACCTTAATGTCTGAGGGAAGTGTC
AAAGATTTGATTTTTATTTGACTATAAAGAGTGAAAACCAGTGTTAAAGATTGTGTCTTG
TTAATGGAACTGGTAGCTTACTCTGACCCCATGACTGAATCAAGTAACTCTAGTCCACCA
TGGCAAGAAATGTTTAGATCTGCTGCAATGAAGAAAACAAAGAACTATGGCTCCCCACAG
ACTCCTCCCAAAACCCCAGAAGCCAAAGAGAAAAAAGATCACAACTTTTTATCAGATGAA
GCTCAGGTACGCTTCGCCCTCTATATAGCGATGGCTCATGCTGGTCTTGCTTTCACAATT
TTCATTCTTTATGCTGTTGGCAAATTGCTTGAAGAATATTTAAGGCCTATTTTGTGGGCT
GTGCTTTGTTCAATACCTTTGAGAGGAATTCAGCAAGCCCTTGTTGCATTTTGGTCTGAA
CCTTTAAAGCTAGGCCTTACAGAGACCATTTTGGCGATCCCCGTTTCTGTACTCAGGATT
TTTGTTGGAACCCTTGTTGATATTAGGGAAATGATTTTCAGAGTTGTTCTACGGAGACAG
AAAGGTAGTGCTTTGAAGCGTAATCGAAGTGGATTTTTTATGTTGTTGAGGTGGCTAGTT
TCATTTTGGGTGTTTGTGATGGCATATGAGCAAATTGGTCTCTTTGGATCAGTTGCTCTT
CTTGCATTGGGATTTATGTTTCCTGTTAACAGTGTGGAGTCTACAATGGATGCAGTAACA
TCTTTCAGGAGTCATAGCTTTCGTAGACTGTCGATATCTGCTTTCTTCACTAGAGGGATA
TTGAAAAGATTGAAAACCATTGTGGCAGTAGGACTTATTATTGGGCTGAGTGTAGGTTCT
TTGGCAGGTACGATTTTCTTCTCTTATGAGATTGGAGTTGAAGGAAAAGACGCTGTTATT
GCGTTGAAATCACGTGTAGAGGAGAGTAATTATGCTGAGAAAATTGGTGTCAAACAATGG
ATGGATGAAAATGATGTCCCTGCTATGGTCGATAAGTACAGTAGTCAATTGTATGAGACT
CTATTCTACCAACTAGATAGCTATGCTAAGCAGTATAATATGACTGAGTTTGTTTCCGGG
ATCAAACACTTTATCACAACTCCGGTGAATAGCTCTTTTGAGCGGTCTACAGCTTTGTCA
TCCCGCTCTAGATACACTAAAAAGATCATGAGCATAAAAAGGAGGATTAAGGATCGCGAA
TGGAGACAAATGTATACAGAAATGGACGCGTTTTTCAAAGAATTGTTGATCACTAGAAAG
GACTTGGTTGAAAAGGCAAAAGGATTTGCCCTTCAAGGAGCAAATATAATGCAAGGAGTA
ATTATTACTAGTACATCTCTTTTAGGTAGCAGTATGCAGGTCATGTTTTCGATTGGAAAT
TCTATACTTTCAGGAGCTGCAGGTCTTTTCAATTTCGTGTCTCAGTCGATGGTGTTCTTT
TGGGTACTTTATTATCTTATCACATCAGAGTCTGGAGGAGCAACGGAACAAGTAATATGT
ATGCTTCCAATACCGCACTCTGCAAGGACTCGATGTGTTGAAGTTCTTGATAAAGCAATT
TCTGGTGTCATTTTAGCAACTGCTGAGATTGCATTCTTTCAGGGATGCCTGACTTGGCTC
TTGTTCAGATTATACTCGATACATTTTCTGTACATGTCGACTGTTCTTGCATTTATAAGT
CCTTTGTTTCCGATTTTCCCTGAGTGGCTTTCAACTATCCCAACAGCATTACAGTTAGTG
TTTGAAGGTCGATATGTATTGGCGATCAGCTTATCCTTTATCCATCTTGTGCTTATGGAT
TATGGTACTTCTGAAATTCAAGATGATATCCCTGGCTATAGTGCATATCTCACTGGTCTC
AGCATCATCGGCGGAATGACACTGTGTTCTTCAGCAATTGAGGGAGCGATCATGGGGCCG
CTAATAACTACTGTTGTGATTGGAATCAAAGATTTGTATGTTGAGTTTGTACTGGAAGCA
CAGAAGGAATAAACAGAAATAACTCAAGTCTCCTATGCTGCAACTAAGCTTGATTCGCGA
AGTGTTACAATAGAACACTGAATCTTTTTTTCGCGGATCAATGGTTGGATTTGGTTCTCC
CTGTGATGGACTGTCTGTGTTTTCTGCAAATTGGCTCGACATTTATGTACGTTTCAACAA
TCTGTCAATTCGTCTTCCTCTGCAAACTGGCTCGAGGTCTTATGTATGTCCTCAAAATCT
GTCAATATGTGTATGTAATTTGCAAGCTCTTCAGTTACTGTATATTTATGTGTACTGTGT
AGTATCATTTTTCTAAATATTTGTTTGATTGCATGTAGATCGAGTTATTTACCATCTTTT
CTACCACTTCTCATGTCTTTG
