Microarray Probes on PGSC0003DMT400016508
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_44026_PI426222305 |
JHI_St_60k_v1 |
GACAACTTAACTGGACTTCCCAAAATTATGGATTGCATGGCAAATGAAGTTGACATATTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400016508
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400016508 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G04200.1 |
+2 |
3e-102 |
334 |
161/242 (67%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:1109676-1113875 FORWARD LENGTH=732 |
Transcript Sequence (2340 bp)
>PGSC0003DMT400016508 2340 pgsc_dm_v3.4
CATTTAACAGGATGTTTACCTTCATACAAATTGCCTTGCAACATTAGCTAATATGGCACC
TCATGTACATCGCCTAAGTGGTTATGCATCACAACGTTTAGTGAGCCTATTTGACATGCT
TGCACGCAAGTACAACAAATTGGCAGAGATGAAAAATGATAAGATGCATGTGCCCAATGG
TGAATCAAAGGAAGAAAATAGTCTCCAAGAAGATATGGCAGCTGAGTTGCATATTTATAC
CGACTTCTTAAGAATTGTTCTTGAGATATTAAATGCAATTCTGACCTATTCCTTGCCGCG
GAATCCTGAGGTTATTTACGCAATTATGCACAGGCAGGAAGTTTTTCAGCCATTCAAAAG
TCATCCACGATTCAATGAACTGCTTGACAACATATTTATGGTTTTGGACTTCTTCAACAG
TCGCATGGATGCCCAAAAGATGGACGGGGAATGGTCTGTAGAGAAAGTACTGCAAGTGAT
TATTGTTAATTGCCGATCTTGGAGGGTTGACGGACTAAAGATGTTTACCCAATTGCGTTT
CACATATGAACAAGAGAGTCATCCTGAGGAGTTCTTCATTCCATATGTGTGGCAGCTGGT
GTTGTCTCGGAGTGGTCTCAACTTTTCTCCTAGCAGCATACATCTTTTCCCGGCTGACCT
TCCTCTCCAAGATAATATTGGCGAGGAGGCTGAAAAGCCTCAGAAAGGTGACATGAAAGG
AAATGAGCTAAAGATAGAGGTGCCAGTTTGACGGATTATCAACCCAGAAGACTACGCTGT
GTATATACATACATGTATCTATAGATATGTATTCTTGTCATTCTTTTCTGTTCATAACTT
AAGAGTAGAGGATTTTTACTTACAGCTGAGTGAATTGAAATATCATCAGTAAAATAAATA
AAGGTACTGGTCAAGTTTAGGCTTTTAATATAGTTCTACTAGGTAAAATAACTCCCATTA
TATCAATTTTGAAGAAGCAACTATGCTAATTTGCTTACCCTTTTGGGCAAGTGTTCAACA
TGAACAAGTTGGTGGTTGTCAATAGTACACTGTAGCCGGTATATATTTACCCTTCTGCAT
TTGTCGAACATTTTGGATGATATGATACACGATGGTACTACGATCATTCCATCACTTGGT
TTGGCAATTGAAATTGTCATTGATACTTTGTTAGTGAACAGTGTATGTATGTATTCATGT
GAATTAGGTTACACTCCTGAACACAAATAAGAGACCAACAAATAAGTAATTAAAAGTAAC
AATATAAACTTTATATTATTATTATTATTCATTTTATATACTTAGACTTGGAAAAGGCCA
GCTCCTTTAACATATTCAGTAAAAGCTAAAGCAACTAATCCCAACATAGCAAATCTGCCA
TTCCAAATCTCAGCATCAGCACTCATAATCCCATCAGATTTAGACTCAACAGTAACTCCT
TGGAACAATGGGATTAGTGAAGCCAAAGTTAGCAATGCACTTGACCCCAAGAACCATAAT
AATCCACCGTTTGATAACTGTGCAGATAAATCTGCACCGTTGGCTAGCTCCACACCAATG
GCTGCTACAAATCCAATCATGGCTAGCCTACCGTTGATCCTCTCAGGTGCTGGACCACTG
AACGAGAATATATCGGAGAAATTGGTGCTTGGTTTTGCCTGTTACATAAAAAAACACGAG
TAAAAAGAATTAAAAAATGTCTCAAGTTATTAGTTTATTTTTAAAAAAAAAAAAAATTGC
CATCAATGTTATGGTCGAAAAATGCCCTTCTAGACTTTTCAAGAAAAATTGGAAATCTAA
AATCAACCTAAAAAATATGCTTGAAGTAAGCTAAGTGAACTTTTCAAGAAAAAGATAGTA
CTACCAACCTTAGCAAAAGGAGCAGGTGTTGGCTTGGGAACTGTAGCAGCAGAATCAGTC
AAAGGGGTTGAAGCTTTGTCTAACTTCTCACCCTCCTGCAGTTTTTTCAAATTGACATAC
TTTGAATCTCGAAAAGTAAAAAATATCACACAAATTGAAAAAACTATTTTTTTTTTTAAT
AATATGAAAAAGAAGAGTTTAAGATTTATGGGCGGACCTCAGCCATACACTTAACACGAA
GAGGCGAACGCCTGTGAAGGCGTGGCAAGTAACAGCTAGGAACAAACTGATTCAAGCCAT
TTCTACTTTGTGACAACTTAACTGGACTTCCCAAAATTATGGATTGCATGGCAAATGAAG
TTGACATATTTTATTTTTTTTACTTAAAGAGAAAATGCTATACTTTTCAAGAGTTGAAAA
AAGGTGAAGAAGAACTAGTGTTATTTAGTGAACAAATTTATTAATTCACTTTGATATAAT
