Microarray Probes on PGSC0003DMT400016507
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_44039_PI426222305 |
JHI_St_60k_v1 |
GACAACTTAACTGGACTTCCCAAAATTATGGATTGCATGGCAAATGAAGTTGACATATTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400016507
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400016507 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G04200.1 |
+1 |
1e-55 |
203 |
93/144 (65%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:1109676-1113875 FORWARD LENGTH=732 |
Transcript Sequence (2048 bp)
>PGSC0003DMT400016507 2048 pgsc_dm_v3.4
GCATTCCAAAACTGGCAGGTTATTTACGCAATTATGCACAGGCAGGAAGTTTTTCAGCCA
TTCAAAAGTCATCCACGATTCAATGAACTGCTTGACAACATATTTATGGTTTTGGACTTC
TTCAACAGTCGCATGGATGCCCAAAAGATGGACGGGGAATGGTCTGTAGAGAAAGTACTG
CAAGTGATTATTGTTAATTGCCGATCTTGGAGGGTTGACGGACTAAAGATGTTTACCCAA
TTGCGTTTCACATATGAACAAGAGAGTCATCCTGAGGAGTTCTTCATTCCATATGTGTGG
CAGCTGGTGTTGTCTCGGAGTGGTCTCAACTTTTCTCCTAGCAGCATACATCTTTTCCCG
GCTGACCTTCCTCTCCAAGATAATATTGGCGAGGAGGCTGAAAAGCCTCAGAAAGGTGAC
ATGAAAGGAAATGAGCTAAAGATAGAGGTGCCAGTTTGACGGATTATCAACCCAGAAGAC
TACGCTGTGTATATACATACATGTATCTATAGATATGTATTCTTGTCATTCTTTTCTGTT
CATAACTTAAGAGTAGAGGATTTTTACTTACAGCTGAGTGAATTGAAATATCATCAGTAA
AATAAATAAAGGTACTGGTCAAGTTTAGGCTTTTAATATAGTTCTACTAGGTAAAATAAC
TCCCATTATATCAATTTTGAAGAAGCAACTATGCTAATTTGCTTACCCTTTTGGGCAAGT
GTTCAACATGAACAAGTTGGTGGTTGTCAATAGTACACTGTAGCCGGTATATATTTACCC
TTCTGCATTTGTCGAACATTTTGGATGATATGATACACGATGGTACTACGATCATTCCAT
CACTTGGTTTGGCAATTGAAATTGTCATTGATACTTTGTTAGTGAACAGTGTATGTATGT
ATTCATGTGAATTAGGTTACACTCCTGAACACAAATAAGAGACCAACAAATAAGTAATTA
AAAGTAACAATATAAACTTTATATTATTATTATTATTCATTTTATATACTTAGACTTGGA
AAAGGCCAGCTCCTTTAACATATTCAGTAAAAGCTAAAGCAACTAATCCCAACATAGCAA
ATCTGCCATTCCAAATCTCAGCATCAGCACTCATAATCCCATCAGATTTAGACTCAACAG
TAACTCCTTGGAACAATGGGATTAGTGAAGCCAAAGTTAGCAATGCACTTGACCCCAAGA
ACCATAATAATCCACCGTTTGATAACTGTGCAGATAAATCTGCACCGTTGGCTAGCTCCA
CACCAATGGCTGCTACAAATCCAATCATGGCTAGCCTACCGTTGATCCTCTCAGGTGCTG
GACCACTGAACGAGAATATATCGGAGAAATTGGTGCTTGGTTTTGCCTGTTACATAAAAA
AACACGAGTAAAAAGAATTAAAAAATGTCTCAAGTTATTAGTTTATTTTTAAAAAAAAAA
AAAATTGCCATCAATGTTATGGTCGAAAAATGCCCTTCTAGACTTTTCAAGAAAAATTGG
AAATCTAAAATCAACCTAAAAAATATGCTTGAAGTAAGCTAAGTGAACTTTTCAAGAAAA
AGATAGTACTACCAACCTTAGCAAAAGGAGCAGGTGTTGGCTTGGGAACTGTAGCAGCAG
AATCAGTCAAAGGGGTTGAAGCTTTGTCTAACTTCTCACCCTCCTGCAGTTTTTTCAAAT
TGACATACTTTGAATCTCGAAAAGTAAAAAATATCACACAAATTGAAAAAACTATTTTTT
TTTTTAATAATATGAAAAAGAAGAGTTTAAGATTTATGGGCGGACCTCAGCCATACACTT
AACACGAAGAGGCGAACGCCTGTGAAGGCGTGGCAAGTAACAGCTAGGAACAAACTGATT
CAAGCCATTTCTACTTTGTGACAACTTAACTGGACTTCCCAAAATTATGGATTGCATGGC
AAATGAAGTTGACATATTTTATTTTTTTTACTTAAAGAGAAAATGCTATACTTTTCAAGA
GTTGAAAAAAGGTGAAGAAGAACTAGTGTTATTTAGTGAACAAATTTATTAATTCACTTT
GATATAAT
