Microarray Probes on PGSC0003DMT400014953
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_25234_PI426222305 |
JHI_St_60k_v1 |
GGTAGAGACCATTTTTATATTGTGGGCAGTGTAAATGGTTAATTTTGAAGATGTGTAGCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400014953
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400014953 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G64380.1 |
+2 |
1e-50 |
178 |
149/314 (47%) |
Integrase-type DNA-binding superfamily protein | chr1:23890981-23891988 REVERSE LENGTH=335 |
Transcript Sequence (1505 bp)
>PGSC0003DMT400014953 1505 pgsc_dm_v3.4
CAAAAAATCTTTTTTATCCAAATCCCAACTTCCCCTGAATTTCCAATTTTTCTTCCTCAT
ATAAGCCAATCATCAAGAACAAATTCTTCAACTTTTAACACACCCTCAAATTTTCTTGGA
TCAGTGTATTATAAATCTCAACAAAAGGGACAATTTTTTTTAGTATCCTTTTTTCCTTTC
TGTGTTGTCTCTTTTTTCCTACATCACTCGTCTCTCTTGAGGAAATCAAGAAACTATGAG
CAGAATTCAAGAAAACATGTCTTACACATATGATGAGGCTGCTCAAATTAGATCTTCTTT
ATCTCAAATCCTATTAACAAGTAGTACCAACACTTTAGACTCAATATTTTTTCATTGCCA
AGAACCAAAAAATCAAATGACTACTACTAGTCCTGTTCTTGAACCACTATGTTCTTCAGT
CTATCTCAGACAAAAAGATTTGCTCCAAAATTTTTGGGAACAAAACAGAACAAATATCAC
AATTCCAACAACTTCCACACAAACCCCACTTCAAGAATCATTATACTCACAAAGATATGT
TAGTCCAAACAAGAAAAAGTTATATAGAGGAGTGAGACAAAGGCATTGGGGAAAATGGGT
GGCTGAAATAAGACTTCCTCAGAAGAGAATGAGAGTTTGGCTTGGAACTTATGACAATGC
TGAGGCTGCAGCTTATGCTTATGACAGAGCAGCCTATAAACTTCGCGGGGAATATGCACG
ATTGAACTTTCCAAATCTACGCGATCCAAGTGAGTTGGGATTTGGAGATAGTGCAAAGAT
GAATGCTTTGAAGAATTCTGTGGATGCTAAGATTCAAGCTATTTGCCAGAAGGTTAAAAG
GGAGAGAGCTAAAAAGGGTGGAAAGAAAATTGTTGAAAGTGAGAAAAAAGTTGCAAAAAA
TGTGGATTTGGATTCATCATCTTGTTCTTCTTCTTCATTGGTTGATAGTGAAAGTTGGAG
TCATAGTGATGTGATTTCACAGAGTAGTTCTGATGATGGATTCTTGAATAGTGAGAAATC
ACCTTGCTCTGTTCTTGGTGACTGCCCCATGGGGCCCGAGAACGATAATTGCCATGTCAC
TAGCATCACACATCATTTCGAAAGGTCTGTGCTGGAATCAGAGTTCGAAGATTATTCCTT
AGCAGCAATGCCTTCTTTTGATCCTGAGTTGATATGGGCAGTTCTGGCTAGCTAGAAGTC
ATTCCGACTTTGTACGTAGGATTCAAAATTTTAAGTTTATGAATTCCGATTACAATCCTT
TTTTGTTGAGCAAAACACTATTGGATCTTACCAACCCCATAACTTCAGCTGTAGATACAC
CCCTTCTTACCCTCCACATGACTTGAATTTTTTACTTTTAGGTTAAAAGTGCTTTGGATA
TTTGTAGAATCTCTTCTTGAGATGCGGTAGAGACCATTTTTATATTGTGGGCAGTGTAAA
TGGTTAATTTTGAAGATGTGTAGCTATTTAGTTATATGAATTCTTTTGTTAAATTAATCA
AGAAC
