Microarray Probes on PGSC0003DMT400013020
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_8997_PI426222305 |
JHI_St_60k_v1 |
GATAGACCCTTGTTGTCCTATTCTTGTTGATTTTTCATTTTTAGGCATGTATTCGACTAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400013020
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400013020 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G61760.1 |
+1 |
1e-67 |
216 |
110/226 (49%) |
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:22807440-22808114 REVERSE LENGTH=224 |
Transcript Sequence (1116 bp)
>PGSC0003DMT400013020 1116 pgsc_dm_v3.4
AGAATCCAATAACACTACTTCTCAAGAAAGTATATTTAATTATATACTAAGATCACATAA
CCAGTTCTTCTTTTGTTCTTTTCTTTCCTAAAAAGTTCTCAACAATACTATGACATCCAA
AGATTTGCATTATATAATAATGTACTCTAAAAACTGTTCATGATCAACCACAATTCCATT
CACTTGAAAAAACAAAAAAAAATGCAGCATTCTAGGCCAGAGTTACCAGTTAATCGTCGC
GATCAAGATCGCCCTGTAAGGCGACACCATAGTGCTAGCTACTATGCCCACTGGGTTAAA
GAAAGTTTAACCACAAGAGTGTCAAAGCTCATATGTGCTATATTCTTAGGCCTTCTTGCA
ATTGTTGGACTCATCACATTCATTTTATGGCTAAGTCTTCGTCCCCATCGTCCACATATT
TTCCTCAATGACTTCTCTATTCCTGCTTTAGGCCACGGAGATGGTGGTGGTGGACCTGAA
AATGCACACATAAGCTTCAGAGTTACAGCAAGGAATTCAAATCAAGGTATTGGAATCTAC
TATGATGCAAGTCAAGTGACGGTGTATTATCGAGAAAAGAGCGTTGGAGGGTACCAAGTG
TCGACAACATTCTATCAACAGCCTAAGAATAGCACCCTGTTTGCTAGTACGCTTAGTGGT
TCATCATTGACATTGACAGAGTCACAGTGGAAGCAAATGCTGCATGATCGGTCGAGGGGG
GCAGTGATTTTTCGTGTTGAATTAGTTTCGACTATAAGATTTAAGATTTCGTCGTGGAGC
AGTAAACATCATAGGTTTCATGCTAATTGTCCCGCTGGACTAGGACAAGATGGCAAGCTG
TTGCCTATTTATATGGACAAGAGGTGTTCTTTTTATTTCTATTGATGAATTAGGAAGGGG
AACATTTATTTATGATATTTTCCATTTGTTGTCCTATTCTTATCACAACAATAACATACC
TAGTGTAATCCCACAAGTGGGTCTAATTAGGGTAGTGTGTACGCACACCTTACTGATTCT
AATAGACCCATAGAAGGTAGAGTGGTTGTTTCCGATAGACCCTTGTTGTCCTATTCTTGT
TGATTTTTCATTTTTAGGCATGTATTCGACTACAAA
