Microarray Probes on PGSC0003DMT400011985
Probe ID | Chip | Probe Sequence |
---|
CUST_20711_PI426222305 |
JHI_St_60k_v1 |
TTGATCGAATTGTATCATCCGATGGACTTATCACCGTTTGTGGCTTCGGTTCTCTCCTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400011985
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Source Transcript PGSC0003DMT400011985 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT4G16060.1 |
+2 |
6e-97 |
215 |
99/135 (73%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:9094424-9096147 FORWARD LENGTH=289 |
Transcript Sequence (1263 bp)
>PGSC0003DMT400011985 1263 pgsc_dm_v3.4
AAAAAATGAGTCATCTTTCTCACAATATTCACGTGATACACATGACCACTCATTCTACTC
CTTCTGTATGTGTAGGTCTTCCATCGCTGCCGTACGCGCGTGTCTACACGCGCTTAGGAC
CTACTTATGTCGCCTCCGCCACTCATCCTCCTCGTTCACTCCGCTTCTCTTTTTCTCGCC
GGAGATATTACATTTTCCCGCGAAAATTCACCATGCCTTCCGCCTCCACCGCCGATTACC
CCGTCGATGGCGATGAGCTGAAATTTCCGTTGGAACTTGCCAATGAATCTGATTTTGATC
GAATTGTATCATCCGATGGACTTATCACCGTTTGTGGCTTCGGTTCTCTCCTCTCAGAGA
GGAGTGCTCGGAGTACATTTCCGGATCTGATCAACTTCAGAGTGGCGAAAGTGAGTGGAT
TTCGGAGAGTGTTTGCTCATGTGGCACCTATTTTCTTCGAGCGTGGAATAGCTAAACCTG
AAACAAAGGAAATATCAAGCTTGAGCGTGGAGCCCTGTGAAGGGGAAACTCTTATAGTTA
CTATCTTTGAGATTCAGAGATCGGAGGCCAGATTCCAGCATTTATTGAAAGAGAGCACGA
GTTTCGGTTTTTAGCTGTAATCCCGGAAACACTAAATGAATTGTTTTACATCAATCCAGC
TATTATTTGTGCCCGTTATAGTGATGAGGAATATCTGAAAAATAGATGCAAAGGTGATAA
AGACATCTTCTTCCAGCGGTATGGACGGTACAATATTAACAAGTTATGGCGAGATGATAT
ATTCCCTTGTCGTGTCTATCTCCGTCATTGTGTCCTGGCAGCTCAAAATCTCTGTGATCT
AGCCTACGACAACTTTCTTGATCATACCTTCCTTGGTGACCGTAGAACTACAATACGCGA
GTACTTGTCAACAAGTGGTTCTGGAATCATGGAAGAGGAGCCTCCAGAGTTGTTAAAAGA
ACGATATGGCGGTTGAGTCTGATGCTGAGTGAATGAGATTGCACGATTTTTAGTTATTCC
ATTAGATATCAAGCAACTTTGCTGACTAACTCCATATTAGGTTATATATCAGAAATATTT
GTGATTTGCATCACAAATAAACTGCATTGACTTGTAATCTGTATTGACAAACTTCTGCTC
AATCAAAAGTGAGTGTTTTTCGACACGAAAAGTGCGATAATGCTAATATGTCTATCAAAG
TATCAAGTTGAATATGATGGAATTTCATATGCCTTTCTGAATGTACACTTGTTTGGTTTT
GTC