Microarray Probes on PGSC0003DMT400011015
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_37873_PI426222305 |
JHI_St_60k_v1 |
GAGCTCCTGACCACATGTCAATAAGTTGGGGGATTTTAGCTTAAAAGTTTAATCTTATAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400011015
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400011015 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G63520.1 |
+2 |
7e-49 |
181 |
157/567 (28%) |
carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538 |
Transcript Sequence (2144 bp)
>PGSC0003DMT400011015 2144 pgsc_dm_v3.4
TGAATAATAATTTCTAGAGATGGCTGCTAATAGTTATTCACTACTTCAAGTGGTCACCAA
ATGCTCTTTGCAGAAGCCTTCACGTCCAACCAAACTTGAGCACTCCAGGAATCCACTCTC
ATCTACTTTCAAGCCAATATTACTGAGGGAGTTGGACCATTTTCCAAATATTTCATTAGA
CGTTCCAAAAGCTATCAAAGACGCTTCGTTCAATTTATTGGAAGCTTTTGTTGACTTTAT
ATGTGAATTCGTTGACCAACCATTGCTTCCATCTAAGAGTAATTTTGCACCGGTGGAAGA
GATGATAGAAGGTACAACAGTAGGAATAGTTGAAGGGAAAATTCCAGATGATTTTCCAGA
GGGTGTTTACGTAAGAAACGGTACATTGGATTTTTTTCTACGGCCAAATCCTCTATTTGG
AGGACTGAAATCGACGAGATCTATATTTGGTGAATCGAGCCATATGTGGATTGAGGGTGA
AGGAATGGTTCATGCTCTCTACTTAAACAAAGAGAATGGCGGAAAATGGAAGGCGTTGTA
CAAGAACAAACATGTCCAGACAGATAGCTATAATATGGAAAAGGATCGAAAGAAACCAGG
TTTTCTTCCTGCTATTCAAGGCGATTCTAACGCTATACTCCTCTCCTACCTTCTAAATTT
GTTGAGGTTTGGTGTGACAGACAAAAGTCTGAGCAACAGTAATGTGTTTGAACATGGAAA
CAAATACTACTCAATTGCTGAGAACCATATGCCTCAAGAGATCGACATACATTCCCTACA
AACTAAGGGAAATTGGAACATTTTAAGTGGATCTTGGAATAGACCCTTCACAAGCCACCC
AAAGAAAGCACCCGGGACGGGAGAACTAGTTATAATTGGTATTGATGGAAAAAAGCCTTA
TATGGAACTTGGTGTGATTTCAGCCGATGGGAAAAAAATGGTTCACAAAGCGGATCTCAT
GTTCGATAGATGTACCGTTTGCCATGAAATAGGAGTTACACAAAGATACAATGTGATCAT
GAATTTCCCGCTAATAGTTGACATAAGTCAACTTGTTCTTGGAGGCCAGTTAATGAAGTT
TGAAAAAGATGGATATGCAAGAATTGGGATAATGCCACGCTATGGTGATGCCAATTCCAT
CAAATGGTTTGAGGTCAACCCTTGTAGTGTATTTCACATCATTAATTGCTTCGAACTTAA
TGATGAGGTGGTGGTGAGAGCATGTGAAGCTCGTCAATCAGTTATACCAGGACCTAGTTC
TAGCATCAACCATTTTGACAAGTTCTCCAAATGGTTGAAAAGGGAAACAAGTTCCACAAA
TGGCGACTCTCATGAGTTCACAAAAGAATCAACTTTTTCTCGTGTTTGCGAATGGAGATT
AAACATGAAAACTGGACAAGTTAAAGAGAAGAAGAATATATTTGGAGATGAGTTTGTAAT
GGAATTCCCTTTCATCAATGAAAATATCTCAGGATTTAGAAATAAATTTGCTTATCTACA
AGTTGTTGAGTCCACAGAGGTGTCTGGCTCAGGATTCTCTAAATTTGGTGGGCTAATCAA
GGTTCATTATGAAGAAAAGAAAACCTTTAATATGGATGAAGAAGATGAATTGATTAAAGC
AGAATATCACATGTTCCCAAAGAACACATTTTGTTCAGGAGCTTCATTTGTTCCAAAACT
TGGAGGCATCGATGAAGACGATGGTTGGATAATTACATTTACGCATAACGAAAATGAGAA
TATTTCTCAAGTTTGTATAATTGATGCAAAGAAATTTACGGAAGAGCCAGTTGCTATTAT
AACTTTATCGAGTAGGGTGCCATACGGATTTCATGGAGCTTTCATGCCATTAACGTCTTA
AAAGTATACTATGTGATTAGGAATTTTAATATAAGCAATTAAAATTATGTATAAAGTGGC
CGTCTGATGCACTAAAGCTCCCGATATGCATAGGGTCCGAGGAAGGATCCCGACCATAAG
GGTCTATTATACGCAGTCTTGCCTTGCATTTCTGCAAGATGCTATTGTTAAGGCTTGAAC
CGATGAGCTCCTGACCACATGTCAATAAGTTGGGGGATTTTAGCTTAAAAGTTTAATCTT
ATATATGTTCTATGTTTATTTAATTACCTTGCATTCAATACTCT
