Microarray Probes on PGSC0003DMT400009900
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_28527_PI426222305 |
JHI_St_60k_v1 |
CGACAAGACAAACTATTTATCATAAGGATAGGTGTCAAATGAAAGCGCAATGAAAGAACT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400009900
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400009900 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G36690.1 |
+2 |
1e-157 |
458 |
227/381 (60%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:15379930-15381987 FORWARD LENGTH=366 |
Transcript Sequence (1602 bp)
>PGSC0003DMT400009900 1602 pgsc_dm_v3.4
AATTCCTCTATATATTTCTCTTCTTTTCAATTGGTTTTTAAAAATGTCTCCAGCATTGGC
AAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATAATTATCATAAAGGAGTAAAGTA
TTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAG
ACCAAATTCTTATACTATAAATGGAAATCCACAAGTTACTAGCAAACACAATCTTAAGTT
GCCTATCATAGATTTTGCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACT
ATCCTATGCTTGTGAAAACTATGGATTTTTTCAGTTGATAAACCATGGAATTCCAGAAGA
GGTAATAAAAAGTATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAG
GGAAAAGTACATGACAACAGACATGACAACACCTGTTCGATATGGGACAAGTTTTAATCA
AACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGTTGGTTTGTGACCCTCTTCC
TCAAGTCCTTCCTCATTGGCCTTCTTCTCCCTCTGATTTTAGGGAAATGGCAGTCACATA
CTCAAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGCCTTGG
AATTAATGTTGCAACAAAAAACAAGACACAACAAAATGATGATGATGATGATGATGAAAT
GTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCC
TAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTCTAACTCTTCT
ACTACAAGATGAAGTTGAAGGTTTACAAGTGAAGTGCAATGATGATTGGGTCACTATTCA
ACCTATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAGATATTTAGCAATGG
GAAGTACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGT
GGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAG
TGAAGCAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAGTACTTAAA
ATCTTGTGATTCCACTAACAAAAGTTTCCTTGAGACAAGAAAGTTAACATGAAAAAAAAT
AAAATCAAACGCTGCTAGACAAGTTCGATTTTATCCGAATCTTCATAGAAAAAGAAGAAG
TGATTCACCAGTCACTACATTCATACTAAATTCCATCAACTCATTAACCATGATGGTTGC
TCGCTCTTGGATGATCAATGATTAACCGACCACCAGATCGATAAAGAGTCTCTCTAAAAT
CTGCTCTTTGATCAGATTTTTTTTTCCGACAGTTGACCTTTCAACGGAAGGTTACGACAA
GACAAACTATTTATCATAAGGATAGGTGTCAAATGAAAGCGCAATGAAAGAACTAGAAGA
ATTTGGATAAGTTTTGTGTATTTTGACTTTTTCATTATTAGTACTATTTTTTTTTGATCG
GTTAGATCAATTATTATTAGAAATTATTGGTTTGGTATAAAG
