Microarray Probes on PGSC0003DMT400009732
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_34760_PI426222305 |
JHI_St_60k_v1 |
TTGGATACAGTAGTAGAGTGTGACTTTCATTTTCAACTGAATGCTCTTCTACCCTGTTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400009732
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400009732 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G48060.1 |
+1 |
7e-16 |
76 |
46/108 (43%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr2:19651560-19662386 REVERSE LENGTH=2462 |
Transcript Sequence (453 bp)
>PGSC0003DMT400009732 453 pgsc_dm_v3.4
ATGCTTTTAATTTTTGTAGGATTCCATTTCAAAGGGAGAGTTCTGTTGTGGTTTGTTTTT
CTATTTTCAGTTCTCGCTATTCTTCTGGAAGTGGTTTTTCTTATTGTATGGGCAATTTTG
GGTCCGGAATGGGAGTTAGCTGATGCATGGTGGATGAAACTTATTGGATTGATGAAACTG
AAGTCATGGAGGTCCCCCTTAGTTATTTATCTCTTGGTTCTGCAACTATTAGCTGCTGGT
GTTGCTTTATTTGAAATCAATGGCAACAGATTTCGCTTGGGTCAGCTGCAAGATCCCCGC
TGGGAGCATTTCTTATCGGTTCTGGAACATATTGGCATTATCCCTGGCATCTCAAATCAT
CTCAAACCTCACACCACAAGTGATTTGCCATTGGATACAGTAGTAGAGTGTGACTTTCAT
TTTCAACTGAATGCTCTTCTACCCTGTTTTTAA
