Microarray Probes on PGSC0003DMT400009112
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5230_PI426222305 |
JHI_St_60k_v1 |
CGACTTGATTGTTAGCTGTCCATACCACTAGGTTCTTTTTAGAATGTTATGCAATATGTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400009112
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400009112 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G54340.1 |
+3 |
1e-68 |
220 |
106/216 (49%) |
K-box region and MADS-box transcription factor family protein | chr3:20119428-20121087 REVERSE LENGTH=232 |
Transcript Sequence (1222 bp)
>PGSC0003DMT400009112 1222 pgsc_dm_v3.4
CTACACTTCAATCTTTGTTTTCCCGATATAGTTTCTCTACTAACCCACCCATCTCTCTTC
ACTTTTTCCTCTCTTTAACTTCATCATTCATCAACAATGAACATGACCCTTGTTTCATCA
CCTCCATTACAACAATTTCTACTTCCTCCACAATGGGTCGTGGAAAAATTGAGATCAAGA
AGATTGAAAACTCGACAAACAGGCAGGTCACTTACTCCAAGAGAAGAAATGGTATTTTCA
AGAAAGCTAAAGAACTTACTGTTCTTTGTGACGCTAAGATCTCTCTCATCATGCTATCAA
GCACCAGGAAATATCATGAGTACACAAGCCCAAACACTACGACAAAAAAGATGATTGATC
AGTATCAGAGTGCACTTGGAGTTGATATTTGGAGCACTCACTACGAGAAAATGCAAGAAA
ACTTGAAGAGATTGCAAGAAATCAATAACAAGCTAAGAAGAGAGATAAGGCAGAGAACAG
GGGAAGACATGAGCGGACTCAATTTGCAGGAACTATGCCACTTGCAGGAGAACATCACTG
AATCTGTAGCTGAGATTCGTGAAAGAAAGTACCACGTGATCAAGAATCAAACAGACACCT
GCAGGAAGAAGGTGAGGAACTTAGAAGAGCAACATGGAAACCTCGTACTTGACTTGGAAG
CAAAATGTGAAGATCCGAAGTACGGTGTAGTGGAAAATGAGGGGCATTACAACTCTGCTG
TGGCATTTGCGAATGGAGTACACAACCTTTATGCTTTTCGCCTACAACCATTGCACCCCA
ATCTTCAAAATGAAGAAGGATTTGGTTCTCGTGATCTACGTCTCTCCTGAAGATATCAAT
TTGCAGCAATGACGTTAAAACCTTAAATGCTGAGTTACTTATTCGAATCAACTTCCCAAA
TTATATCTTATTACTAAAAAAGTTAAATATTGCAAGCTGCAAACACTACTACTTTATCTA
ATTAATTAGGTTTTGCTCTGAGTCTGGATTTGGTTCCTGTCCTATTTATTGTATTAAGCA
CTTTATTATTCTAGGTGTTTCAACTCCTATATATATGGGTGATGCCTTGAACGTATGTTC
AATTAATCAATTTTCCATTTCGACTTGATTGTTAGCTGTCCATACCACTAGGTTCTTTTT
AGAATGTTATGCAATATGTATCTTCATTTGTGAATCTAGTTCTTAATATTTTGTCATCAA
TGGAGCTAAGCTGTTAAATATA
