Microarray Probes on PGSC0003DMT400007060
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5839_PI426222305 |
JHI_St_60k_v1 |
GACCCTTCTTCTGTTACTGGATGATGAAAATATTGTACAATACTATCAGGAACTAAGCTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400007060
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400007060 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G10040.1 |
+3 |
6e-72 |
233 |
139/287 (48%) |
sequence-specific DNA binding transcription factors | chr3:3096580-3097875 REVERSE LENGTH=431 |
Transcript Sequence (1085 bp)
>PGSC0003DMT400007060 1085 pgsc_dm_v3.4
GAGGTGGGGTTGTAGGGGTTTTGCAAAAAAAGGGGAAATGGAAATCAGTTTCTAGAGCAA
TGATGGAAAGGGGTTTTTATGTGTCTCCACAACAATGTGAAGACAAATTCAATGACTTGA
ATAAGAGGTACAAGAGGGTTAATGACATTCTTGGTAAAGGTACTTCTTGTAGAGTTGTGG
AGAATCAAAAGTTGCTTGATACAATGGATCATTTATCACCAAAGATGAAAGAAGAAGTGA
AGAAGTTGTTGAATTCTAAGCACTTGTTTTTTAGAGAAATGTGTGCTTATCATAATAGTT
GTGGTCATAATGGTGGTACTGGTGGTGGTGCTAGTGGGAGTGGAGTTGCTAATCCACAAA
CTCATCAAAACCAATCAGAGCAGCAACAGAGGTGTTTGCATTCATCAGAAAATACAAATG
CAAGAATTGGTGCTAGTTTAGTAGAAGGGCCTAAAATGCCAAAAGGGGCAAGTGGGGAAA
ATGATGAGGAGAATGAGGACGAGGAGGATGAGGATGAAGATGAGGAGGACGACGATGATG
AGGTGTCTGGTGCTAGAGGACACGACCACGACCATCAGAGCCACGGAGAGGAGGACGATG
ACATGGAAAGATCGAGAAAGAGGCAAAGAAAGTTGGGAGCTTCATCACCAATTGTACAAC
AATTGAGTACTGAATTGGCTAATGTAGTTCAAGATAGAGGGAGGAGTCCACTTGAGAAGA
TGCAATGGATGAAAACTAAAATGATACAATTAGAAGAACAACATGTTAGCTATTTGTGCC
AAGCATTTGAACTCCAAAAGCAAAGATTGAAATGGAAGAAATTTATAAGCAAGAAGGAGA
GGGAAATGGAAAGGGATAAACTAATCAATGAGAGGAAAAAATTGGAGAATGAAAGAATGG
TACTTTTGTTGAAGCAAAAAGAGCTTGAACTTCTTGATTATCATCAACACCATCCAAACA
ATAACAATAGGAATAGTGACCCTTCTTCTGTTACTGGATGATGAAAATATTGTACAATAC
TATCAGGAACTAAGCTAATAGATCAGATATATTATGTAAATATATAGTATGTATATATGT
TTTTG
