Microarray Probes on PGSC0003DMT400007053
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5547_PI426222305 |
JHI_St_60k_v1 |
ATATGGTGGTGCCGCCGGCGTTGGATGAGAAAGATCCGAATTATGTGAATGAAGAAGAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400007053
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400007053 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G10020.1 |
+2 |
2e-36 |
129 |
71/143 (50%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3091225-3091674 REVERSE LENGTH=149 |
Transcript Sequence (829 bp)
>PGSC0003DMT400007053 829 pgsc_dm_v3.4
CAGAGTTTTTCCAGAAAGCTCTCATGTAAGGTTCCTAGCAGAACATTCTAGTTTTTCCAG
CACCTTCTAAATTCTAATCAACACAATATTATAAATACCTAATTTAACCTTCCACTCTCT
TCATCTTCACTGGAAAAAAAAAAACTTCAATCTACTAACCAAAATCAAATTCTCCAAAAA
CTTCAATCAATTCAACAAAAGCAAAAAAATGAAGCCAGTGGTAGAGGAAACGACCAATGG
CAAAGTTACAATCAAAACAGAGTGCAGAGCAAACGAAGAAGGACGGAAACACATAGAAAA
ACTCGAACTCGATACTAAAAACGTCGATACTGTTAAGTACGTTGAGAAAAAGTTGACGGA
AAAAGGGGTGCAGAGATTGGAACGGCATCCATCGGACGGGTTGCCGTTAAAGCATGATCC
GAAGAAGGGATACGGAGGTAAGTATACGTGGGAAGGGCCTGATAAGGATAAGGAATTGGA
TATGGTGGTGCCGCCGGCGTTGGATGAGAAAGATCCGAATTATGTGAATGAAGAAGAAAC
AGAGGAAGAAGAAGGAGGAGTTATTGTGGGTGAAATTGAAGTAGCAAAATTGGCTGAAGA
AGGTGTTGCTAGAATTGAAGTTGATCCTAATTTGAAAATTGATTAATCATTGTTGAGATT
TGGGGGAAAAAAATGTTCAATTTGTGTGATTTGTGTTTGTTAATTACTTGTATTTAGATG
ATAATGGTGATGTAATAAATAAGTGAAGTTTTTCTGGTAAAATTCATACCTAATTAGTCT
TTTTTTCAGCTTGAGTAACAAATTTCACTAACTGAATTTTCGAGCTCAC
