Microarray Probes on PGSC0003DMT400001587
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_17468_PI426222305 |
JHI_St_60k_v1 |
GCTACAGAGCTGCCAATCCCTTTGATATTGACACTCTTTAAAATTGTAAATCAGTATCAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001587
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001587 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G54180.1 |
+2 |
1e-155 |
466 |
247/413 (60%) |
plastid transcriptionally active 15 | chr5:21988544-21990183 FORWARD LENGTH=500 |
Transcript Sequence (2322 bp)
>PGSC0003DMT400001587 2322 pgsc_dm_v3.4
TTTTAACCCGTTACTAGTTGGAGAGTGACACTTTGGAGCAACAGCTTTAACTATCATCAT
CTACCTTATCGCCAAGCAACTGGCTGCAGTGTTGCCTCCTTTGTTACCATGTCGACGCCC
ACCAAATCTTTTCCTCTTTCGCCTTCTCCTTCCTGTTTATCTCGGGCTTTATCTCCCCCC
ATACGAACTCTCTTTCCTTCTGCGTTGCTCCCTTCTCAGAAACTCACATTTTCCCTACAG
AAACAAGATAAACTACCTTTACACTTTCTGGTTCCTCAAGATTCCACGCTTTTACTGCTC
AAATGCAACGCCCTCGCCATCAACAACAGCTCTACAAATTCTTTCGTCGATTCCGGTGAG
TTTCTTTCTCTCAGGTCAAATATCAAACACCTGATGTGTTTCTATCATCCCCATTTCTTT
GACTGCTCTTCAATGGTCTCTTTTCTCAGGGGTGATGCTATTTTCACTCTTTCGAGAAAT
TGGGTTCAATGAGACTGATACTGAAGCTCTTTTGGACGCCCACCCAGCAATTAACCTGAC
GCCATTCGAATCCATACGCACGCGAATTCATTCTTTGCAGTCCCTTGGGGTCAGCGGCCT
TGCTCTTTCAAGATTGATTGTGAAAAGACCAGATGTTTTAACAGCTGTGGAAATTGATGG
CCTTGTTAGTTTTCTTCTCAAGGGTGATTTGGAATTGGCTGGAAAAATCAAATCTTCACA
GATTGAACATCTTTTGAACTCAACAGAACCAAGGTTTCTTGCAGGATTTGAAACAAAGGT
TCGATTGTTACTCGAACTTGGGATTACCCAAGAAACGATTGTTCATGTTCTCAACAATGC
CAACTTAACAAAGGCATTTTGTCTCAAGTCATTTGAAGATATAGAAAGAATGCTTACTTT
CTTGAACCGTTTTGGTGGTGGTGATTTGATTCTTCGCCGACCAGCACTTCTCAATTATGA
CCTTGATGCCCAGTTGATTCCCAGGGTAGGGTTCCTCTTGGAGCTGAGTGGAGGTGATGA
GACTGGAACTGCAACCGTGTTGCGTAAGTTGCCATTTGTTGTAGCATATAGCGTTGATCA
CTTAAAAGATCATGTAGAATTCTTGAAATCATATGCTGGCTTAAGTGAGGAGGAGATTTT
TCGAATTGTTTTAGTTTATCCCAATATGTTTAGTGCCAGCAGGAAAAGGAAATTGCATCC
TCGAATTGATTTTCTAAAGCAATGTGGGTTGAGTTCACATGATATATTCAGGTTCTTAAT
AAAAGCTCCTTTATTTCTGAGTCTGTCATTTGAGGGGAATCTCGCTTACAAGCTGGTCTT
TTTGGTGAAGATTGGGTATAAGAAGAATACTAAGGAATTGGCTATGGCAATGGGAGCTGT
AACCAGGACTAGCTGCAAAAATATGCAAGAAGTTATTGGCGTATTTTTGAACTACGGCTT
GACTTTTGATGACATTCTGGAGATGAGCATGAAACATCCGCAGGTATTACAGTACAATCA
TGAGTCACTGGAGGAGAAGATGGACTACTTGGTTGAAGAGATGGGTCGTGAAGTTGGGGA
GCTATTGGCTTTTCCTGCATTTCTTGGGTACAAGCTTGACGGAAGGATTAAACACAGGTA
CGAAGAGAAAAGAAAGATCTTAGGGGAAGGCATGTCGCTCAATAAACTTCTGAGTGTGTC
TGCAGCAAGATTCTCAACAAAAAGCAAGAGGAAGCAACGAGTTCCTGCCGTTAGTGGCCT
CGATGAGAGTGATGAATGATTGAAATGATTTTTGAGACATTATATGTTGTTATAAGCGTG
TGAAAATCTCTATTGAATGTTAAACCCAAAGGTTTGATGGTTCTGTTAGATCAATTCGGT
TTTGCGGATTCCTGATTTTGTTCTTCTGCCCGAGTACAGGACATGCCTATGGACATATTT
GCAGAGGAATGGAAGAAATATGAACAACACCTTCTTTCATTGGCTGAGCATTGGATGTTG
AGGTATTGGTGTTCTTCATGGCTGAGTAAGGACATGATTTTAACTTTTAGTCTGTTTTTC
TAGAAAGGTTTGGTGAGCGTCTTTGCGTTATTCGTAAATAGGGCTTCTTATGAACTAGTG
ATCGTACATTAGTGCAAGTTCTCAATACATACAGCTGATAGTTGACAGCACATTGAAACT
GCTATTCCTGTTGACGATGTGCTACAGAGCTGCCAATCCCTTTGATATTGACACTCTTTA
AAATTGTAAATCAGTATCATATATTGCAAATTCTGATTTATCTTATGCCTATTTTTCCTT
TTAAAATATGGTGCATATGTGCTTTTCAAAGACAAATTATAC
