Microarray Probes on PGSC0003DMT400001380
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1110_PI426222305 |
JHI_St_60k_v1 |
GCTTTAGAGATCTTGATGGGTAAGTGATTATACTCTACAAATTTGAAGTGTGTGGGAATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001380
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001380 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g086550.2 |
+3 |
3e-180 |
520 |
246/259 (95%) |
genomic_reference:SL2.50ch02 gene_region:43791778-43797970 transcript_region:SL2.50ch02:43791778..43797970- go_terms:GO:0005515 functional_description:Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant |
| TAIR PP10 |
AT5G14550.1 |
+3 |
7e-130 |
390 |
183/276 (66%) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4691321-4693732 REVERSE LENGTH=377 |
Transcript Sequence (1889 bp)
>PGSC0003DMT400001380 1889 pgsc_dm_v3.4
TAGAAAGCTGCGAAAAATAAGAAAAAGATAAAACCGGTAGAAGAGAGAATTGAAAAAGAA
GATCAATTTTGAGTAAAGGCAAAGTCTGCAGTGGCCCTCAAAGTGGAGGCAGATTTGGTA
GATTTGCTGGCAAAGAGAAAATCGTTTCGCCATTAAAGCAGCCATTGAAAAGGGGTTCTC
ATTCTCCCTGCAATTCACGCAACCCAGTCTGTATTAAGCTTTATCTTTTACTCACTCAAT
AGTAAAAATCCCAACAACTTATATATTAAGCTAAGTCAAGACTCAAGTCAGCCCTTCACT
CTCACTCTGTGTCCCTTTCTTCTCTTTAATAATACAGTGTCAGTTCACCGGATTCATGAG
AGATAGCTTTGAATTTCTTCCCAGATCCTTTAATTTGATCTCATAATTAATTGTATTTCC
ACACCTTTTCTAGTTGGATCCATTTTGCTACTGAATTGCTTTAGAGATCTTGATGGGTAA
GTGATTATACTCTACAAATTTGAAGTGTGTGGGAATATGGGCTTGAAGTTGATTCGAAGA
TCCAATTCCCAGAAATCTCAGCATAGATGGAAGATAAAAGTGTTTGCTATGATGTTATTT
ATTTTCTTCTTCGGGACTTTAGTGTTAATGGAGACACAGTATAATAGAATTAGAATGTTA
GCGTTGCTTTCTGCTCCTCAAGTCCAAAACCCCAAAATTGCATTTTTGTTTATAGCTCGG
AATCGTCTGCCTTTGGACATTGTTTGGGATGCCTTCTTTCAGGGTGATAAGGAAAATAAA
TTTTCAATCCTGGTTCACTCACGACCAGGGTTTTTATTGAACAAAGTGACGACAAGATCA
GCGTATTTCTTGAATCGCCAAATGAACGATAGTATACAGATTGGGGAGAAGCAACCATGA
TCCAGGCAGAGCGTATTTTACTTCAGCATGCATTGATGGATCCTCTCAATGAACGATTTG
TTTTTCTTTCAGACAGTTGCATACCTTTGTACAACTTCAGCTACACATATGACTACATAA
TGTCTACGCCAAATAGTTTTGTTGACAGCTTTGCTGATACAAAAGAAGGCCGCTATAACC
CCAAAATGGATCCAATTATTTCTGTTCAAAGCTGGAGGAAAGGATCTCAGTGGGCTGTTC
TAAACAGAAAGCATGCAGATATTGTAGTGAAGGATGAAATATTATTTCCTATGTTTCAGT
TGCATTGCAAGAAAAAACCGCTACCTGAGTTTTGGCGGGATCAGTATGTGCCTCCAGATA
CCTCCAAAATTCATAATTGTATACCTGATGAACACTATGTCCAAACTCTGCTTGCTCATG
AAGGACTTGAAGGTGAAATTACACGGAGGACAGTGACTCACACTGCGTGGCTTATTTTAT
CCTCCAAGGAGCGTGAACGGAAAGGATGGCATCCTGTTACCTATAAATTAGCCGATGCTA
CTCCCATGCTAATCCAATCTATCAAGGACATAGACAATATAAATTATGAGACGGAACACC
GGAGAGAGTGGTGCACCAACAAGGAGAAACCTGCCCCTTGTTTCCTTTTTGCAAGGAAAT
TCACACGGCCTGCAGCTCTGAGGCTTCTCAATATGTCTGCGCTTGGACTTTACCACGAAG
AAATAAGCAACGTTTGACACCATGGTGAAACGAGCAACATTTGACATCTACAATACTGTA
CCATCTAGCTATTAGAGATATAGAAAGTTGACTAGCTACAGAAAATTGTAATCTAGCTGA
TAAATGGGGAAGATGTGTAAGTAGAAAGAAAAATTGTTTTGCCAATTTGTATATTTGTAA
AATTTTCCTTTAAACTCAATAATGTTTGGTCGTATATGTATGTAGAGTGAGCTCAATCCA
TTAAATTATAGTTCTGTTTTTGTTTCCAC
