Microarray Probes on PGSC0003DMT400001357
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1011_PI426222305 |
JHI_St_60k_v1 |
GTTGTTTCATTCACAAAGATTTTCATGATGTCGTTGACAGAATGAGTCTTCTCAACAAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001357
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001357 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g087110.2 |
+2 |
0.0 |
1196 |
593/656 (90%) |
genomic_reference:SL2.50ch02 gene_region:44197070-44202789 transcript_region:SL2.50ch02:44197070..44202789+ go_terms:GO:0016165 functional_description:Alpha-dioxygenase (AHRD V1 **-- Q5GQ66_PEA); contains Interpro domain(s) IPR002007 Haem peroxidase, animal |
| TAIR PP10 |
AT3G01420.1 |
+2 |
0.0 |
910 |
447/646 (69%) |
Peroxidase superfamily protein | chr3:159689-162726 REVERSE LENGTH=639 |
Transcript Sequence (2425 bp)
>PGSC0003DMT400001357 2425 pgsc_dm_v3.4
CGTGCGTTTATGCTTTTATACTTATCTCTATATATATAGAAGGGATATGTTTCCTCCAAA
ATTAAGCATTTAGAGCCCTATATATATTACAAGTGATTTCTAGCTTGTAGGAAATTAAAT
TAACAATATGTCTTTTGTTAATCTCTTGCTATTTCCTCTTCGTTGTTTCATTCACAAAGA
TTTTCATGATGTCGTTGACAGAATGAGTCTTCTCAACAAACTTTTGTTTATGATGGTTCA
CTTGGTTGATAAATTGAACCTGTGGCACCGGCTACCGGTGTTCTTGGGGCTACTTTATCT
CGCAGCACGGCGACATCTTCATCAGGAATATAATTTGATCAACGTCGGTGTCGGTAGAAA
ACCTATCGACGTTACATCAAATCGGGCCGTTGGAAAATACAACGACCCTTTTAATGAAGG
AGGTGGCAGTGAATTTCCTTTCTTTGGTAGGAATATGATGCCTGTTGATCAACATGAAAA
GTTAAAGAATCCAGATCCTATGGTAGTTGCAACAAAGCTACTAGCACGCAGAAAATTCAT
AGACACAGGAAAACAATTTAACATGATAGCTGCCTCATGGATACAATTTATGATTCATGA
TTGGATCGATCATTTGGAAGATACTCAACAGATTGAGCTAAGGGCACCTGAAGAAGTTGC
AAGTGAGTGTCCTCTCAAGTCCTTTAAGTTTTTCAAGACCAAGCAAACTCCTACGGGTTT
ATGTGATATCCAGACTGGTCACTTGAACATTCGTACTCCACAATGGGATGGAAGTGCTAT
TTATGGGAACAACGCAGAAGTTTCAAAGAAAGTGAGGACATTTAAAGATGGAAAATTGAA
ACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATCATCTCTGGTGATGT
TCGCAATAATTGGGCTGGACTTTTGTCACTGCAGGCACTCTTTGTTCAAGAGCATAATCT
TGTTTGTGACACCTTGAAGAAAGAATATCCAGAATTGAAAGATGAGGACTTGTATCGTCA
TGCAAAGCTTGTCACTTCTGCTGTAATTGCGAAAATTCACACCATAGATTGGACAGTTGA
ACTTCTCAATACCGACACCCTTCTAGCAGGAATGCGCGCCAATTGGTCAATACTCTCAGA
CACTAGTTATTTTTATTTTGTCAAATAGTGACTAAAATTAATTGTTTGCAGGTATGGATT
GCTAGGAAAGAAATTCAAGGATACATTTGGGCATGTTGGAGGTTCCATTTTAGGTGGTTT
TGTGGGAATGAAGAAACCTGAGGATCATGGTGTGCCTTATTCCTTAACTGAGGAATTTAC
GAGTGTCTATCGGATGCATCAACTCCTACCTGATACGCTTCAGCTAAGAAATATCGATGC
CACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGAGATCCTGATGGAAGATTTAAT
TGGGGGTAAAGGTAAGGAGAATCTATCAAGAATCGGGTTTACTAAGCAAATGGTTTCAAT
GGGCCATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCT
TATTGCCCAAGATGTCGATGGAACTGACAGGCCACATCATATTGACCTTGCAGCTCTTGA
AATTTATAGGGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGTAGGAGAATGCT
TCAAATTCCCATCTCCAAATGGGAAGATTTGACAGATGATGAGGAAGTCATTAAAACTCT
TCATGAAGTTTATGGTGATGAAGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGA
GAAAAAGATTAAGGGATTTGCCATCTCTGAGACTGCCTTTATCATATTTCTAATCATGGC
ATCAAGAAGGTTAGAGGCAGATAAATTTTTCACCAGCTATTACAACGATGAGACATATAC
GAAAAAAGGACTTGAATGGGTGAATACAACAGAAAGCTTAAAAGATGTACTAGATCGACA
TTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGGACTC
GTCTCCAGAACCTCACAATCCTATTCCACTCTACTTTCGCGTTCCTCGGACATAGGCCCC
TTCTCATTATACTTAAAATCAAAATAAAAAGAAGTAAGATGTGTGTCGATTATTTTTTCA
CCTGCAAGTGCGTATTATGATTTCCATGTACTATCTTCACTACTTGTTTCATTCACTGAG
CCGTTTTATGAAACTATATATATCAGATTGTAATATGAATTTCCTGATATTTTTGTCCAA
TAAAAAAAGAGAAACATGTGGTTTGTTTTATATCTAAGAGTCTTTTCTACATTTTTATTG
TTTCAAACACATACTTTAACCAACAAACTTGTATAATTGGCTGAATTGAACAATTAGCAT
TCTTGTATTATATAGTGAATTTGGC
