Microarray Probes on PGSC0003DMT400001297
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1127_PI426222305 |
JHI_St_60k_v1 |
AAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001297
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001297 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g086820.2 |
+2 |
0.0 |
561 |
317/322 (98%) |
genomic_reference:SL2.50ch02 gene_region:44012475-44015926 transcript_region:SL2.50ch02:44012475..44015926+ go_terms:GO:0005515 functional_description:Carbonic anhydrase (AHRD V1 ***- Q5NE20_SOLLC); contains Interpro domain(s) IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site |
| TAIR PP10 |
AT3G01500.2 |
+2 |
7e-131 |
389 |
221/318 (69%) |
carbonic anhydrase 1 | chr3:194853-197873 REVERSE LENGTH=347 |
Transcript Sequence (1639 bp)
>PGSC0003DMT400001297 1639 pgsc_dm_v3.4
GATTTTAAGGCAAAAGTAAGATGCAACATTGAATCTCCAACGTACAAACCTCATCTACAA
TGGATTGAAGCTCTAATTTGCTTAGCCATCACTTTCAACATTGTCTATTGAATTGGTTAT
ATGTAAGAGTCCTAAAGAAGCAATAATCAAGGACCCATCCACTAGCTATAATATTACTAG
TGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTC
AACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACC
TACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAG
TCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTGAG
AGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG
TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATT
GAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTAT
TCATTTCAAAACTGAGAAATATGATACAAACCCAGCCTTATATGGTGAACTAGCAAAGGG
CCAGAGCCCTAAGTTCATGGTTTTCGCGTGCTCTGACTCGCGAGTGTGCCCATCCCATGT
CCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGC
TTATGACAAGGTGAGATACTCTGGAGTGGGAGCAGCCATTGAGTACGCTGTTCTTCATCT
TAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCAT
GTCTCTACCTGAAGATGGTAGTGAATCAACTGCCTTTATTGAGGATTGGGTGAAAATTTG
TTTACCTGCCAAGGCCAAGGTTCTGGCCGATCACGGAGATAAAGAATTTGGACATCAATG
CACAGCTTGTGAGAAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT
CGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGT
GAAGGGAGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATG
AACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTCGCCTGACAGT
ACTTTTGCTTTGCTTATGTAATTGCTTCGCAAAATCAACTGTGTATGTTGTTTGTATGTA
TTATGTATGTATCAATCAAATATGGAAGAGGCACTCGTTTTTATATTTCTGAAATAAATA
AAATGGAGACTACTTTTGGTTTGAAAAGTTGTAGCAAGGTATAAATACGTTTGTGGTGGG
CTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAGGCTCATGTAGAGACAGAGA
GATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATCTGAACCAATTCTTGCTC
ATGTAGACCAAAAATTGGCCATAATAATAATAATAATCATCAAACACTCTTTTCGGCTAC
AATTATACTAGTTTTCCAC
