Microarray Probes on PGSC0003DMT400001179
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18687_PI426222305 |
JHI_St_60k_v1 |
GGCTTCTTCACCTTCAACCTACAAGCCAATTGATGGAGAGGTTTAAATTTCTTTTATTTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001179
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001179 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G59350.1 |
+2 |
2e-28 |
115 |
97/259 (37%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23941132-23941995 FORWARD LENGTH=287 |
Transcript Sequence (1721 bp)
>PGSC0003DMT400001179 1721 pgsc_dm_v3.4
AATATATACTTTCTGCCACTTTCTTTTGTACAACTTACTTGTTTATTCAATTTCTTTCCC
TTTCCTTCTGTTTTCCCTTTTTCCACCGCAGTAAGTATCCACACAGGCACACCTTTTTTC
TTAGCGTGTGTTTAAGGCAAATATATATATTATAATGTTCCCAAAAAAGGGTCTTTTTTT
CTTTAAGGAATCAATTAATGGTTGTTTCAGGATCTGAACTTCAGAGGAAAAAATGGGTAG
TCTTTAAATGGTTTTCTTGATTTGGTTTTGAAGTTTATGTAAGTTGCTCAAGTAAATAGA
TTTGGGAAAACTGCTGTTTTTCTGTTTTCTTTTTTCTCATTTGGGAATTTCCACAAACAA
GTTGTGTGCAAGATTGTGAATTTTGCAAGTAGTGTTGGTTTTTGAGTTTCTCTTTTGGCT
CATTGGGGAAAATCTAGAAAAGGATTGTGTGCAAGATTGAGTTTTTTTGCTCTCAAGTTG
TGTCATTTTTCAATTTCAGTTGTTTAGTATATAGATTGTTGCTTTTGAGTATCTTTTTTT
GCTCATTTGGGAAAATTCCACAAAAGGGTTGTGTCATTGTGTGCAAGATTGTAGTTTGTT
GATTTGGATGTGACTAAAAATGTCATCTTTTAGTGGTTTAGGTATTGGTTTGAGTTTTGT
ATTTGGTTGTATCCTCATGGGACTTGTAGCAGAGTTGTATTACTTGTTATGGGTAAGAAA
AAGAATCCCAAAGAATGAAACAGAGGATCAGTACAACAACAACAACACCCCTTTTGCCAC
TGAATTTTCTCATCTTTTTTGTTGGAAGAAGCATAGTTCTGTAAACAATGTTAGCAGCGA
ACAACGAAGCAACACAGTGAGAAATCAAGAAATGAATGGTCATGTTCATGATCAAGATCA
AGATTTGGAGTTAGGGAATAGCAAAGATTTGTTGCTAAAAGGATATGGTGAAGATAGTGT
AGAATCAGAGTTAATGAGGTTACACAATCTTTGTGGACCTCCAAGATTTCTCTTCACAAT
TAAGGAAGAAACAAAAGAGGATTTAGAATCTGAAGATGGTAAATCTAGATGTGGTGATAG
AAGTAGAACATGTTCAAGAAACAAAAGCTTTAGTGACCTTATCCTTACACCATTGTCATC
ACCACCAATTAAGTGTCAAAATCTTGATTCTTACAATTGTCAAGGATTCAATCCACTCTT
TGAATCCTCAAATGAAAATGAGTTAAACAAACTCAAATCTTCACCCCCTCCAAAGTTCAA
GTTCCTTAGAGACGCCGAGGAGAAACTTATAAGAAGATTAATAGAATTAGAAGCAGAAAA
AAGGGTAATCAAGAATGAAGTTTGTTCAACAGAGGAAAAAGGGTCATTCATATCTTTTCT
TGGAAAGAGCAAAATGAGAGAGCCTCTTCAACAAATACAAGTACATCAAATGAACTCTAC
TACTTGTGTAAAGGTACTTCCATTGGCTTCTTCACCTTCAACCTACAAGCCAATTGATGG
AGAGGTTTAAATTTCTTTTATTTATGTTTTTTTAAACCTCTTTCTCATCTATTAACCAAA
AAAAAGTACAGCAAATTACCTCTTCTTGTATTAATTAACTTTAGTTTTTCAGATAGAAAA
TTAGAGATTTTTATTGTAACTTCTTTGGATTCTTAGTGGTAATGGTTTTGTTTAGCTTGA
GATTGTTAATAATTGTTCCAATGGAAAGAGATGAATTTGTT
