Microarray Probes on PGSC0003DMT400000455
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_3276_PI426222305 |
JHI_St_60k_v1 |
GCCTAGCTACAAGTTGGAGTATACCAGAACCTGAAGACTTACTTTTGAAATAAAATTTGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400000455
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400000455 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G01770.1 |
+3 |
7e-54 |
198 |
106/206 (51%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278759-282490 FORWARD LENGTH=632 |
Transcript Sequence (2508 bp)
>PGSC0003DMT400000455 2508 pgsc_dm_v3.4
AAAAAATAATTTCAACACAACTTATCCTATCATAACTAATCCCAACATAACTTATCCCAA
CATAACTTCTCCCATCATAACTCATTTTCAAACCAAATGACCCCTGATATTATTACTCTG
CTTACCATCTTATTAGGCCGTACAATCTTTTATTGGATGTATTTCCCTAACACAGTAGCA
CCACTATAATCTCATTTGGCTAGTTCACGAAAGATGAATTTTACTTTTAAGATCACTATC
TGCTCTCATTATCATTTCCTTCCATTTCCCTTGAGCAAGCGTTGTTTGTGAATTGCAATG
GTTTACTTTATTTAGCTGGATTGATGGATATTTCTGTTTGTTCTAACTTGGTGACTGCCT
CATTTAGGACAAGGGGTGGAAGGGCTGGGGAGAGATATCCTATGGTGGATATCAGTGTGT
TAAACGTGCTAAAGCTGCTGATTTTTTGGTAAGATCATGGATGGAAGAAGTATACCCTGG
CATAAGCAAACATATAGTTTCCTATATCATTGGACTGGATAGCCTGAAAGCTGTTAGCAT
AGATGAAGATTTGCCAAGGGATAGTCAAGATATTAGATTACGAATGGATGGTTTATTTGA
GAATAAGGAACAAGCAATCCACTTTACAAAAGAGTTCATAGCATTATATACAAATGGACC
TGCTGGTGGTGGCGGTATCAGGTCTTATTCATACCATTTATTGTGACATATTTCAGAAAA
TTGTTGAAATGAAAACGGCTATGAGTAAATTTCCTGGTGCGACAGAGGTGAAGCCAGATT
TTTTAGTTTATTGGTTCTGGATCACAATTCTGTTTGCCTACTGTGTTCTGAATTGATTAT
AAATTTGTACATATTAAATGCATTTTAATTCAATTACAGGGTTTGAGCCAAAGCTATTGG
ATTTAGCCGAATCCGTGGCCAGCACTGTGGCTCCGCCACTGCTGGTGCCTCAAATTTTTT
TCTGTTATATTCATTTATCAATAGTTAAGTTGTTGAAGTATTTCTTAGTATTAGAAAGTT
GGAAAATTAGGAAATTTTCTTTCTGTTAGATACCTATCATATAGATTGCTGTAACATAGT
GATTTTTCTTTTGTGGAGAATCCATCTCATCAGGTAAAGGGACTTCATGGTATGATATGC
TCTCATAGTAATGAGCAATTTGATCTGCACTGTTGTCTTCCATGTGGAAGTTGTAATATC
CGTCGCATGTCTTTTACTAGAGCAGTTTCTTCACTCAAGCACCTAATTTTAATACTACAA
CTCGATGCAGCATCAATCTGAGTATATTGAATCATTACCTAATAATGTGTTTTTGAATTT
TTTCCATGTGCAGAACTGTCTTTGTTTTTTGTGGTCACCAATGATCAAAGGCTTGTAATA
TCCTTCACTTCATGTTAATAATGAATGTGTCTCTGACTCTGATTATATCCCCCTCCCAGT
TTTCCTCTTGCTAGACTTAATTCCCCTTCTCGATTATGTCAAAACATATTTCCATGACAT
GTACATTATCTTCTTTTTAATATGGATAGCTGTCTCAGTATTCCTGCCTCAATTCATTTA
ATACTTCCGTATGTTAAGAACATATTTCTATGACACGTATTAATGCTCTACATCTTCTTT
TATTGTATGGCAGCACTGGACACAAAAAAGACATCATTCTTGAGAAAGCACTGGTAAAAC
GTAAAGATGTTCAGTGGCATATGACAGCAACAAGAAATAAAATTATGCAATCAGATGATC
TGGCTAGCCCTAAAAACATAATACAGACCAGTTCATTCCATGAATCAGTCTTGCAATCAC
TTACAATGGAAACTACTTTGAATCACAAAGAAGGTTCACCGCAAATTGAGCTGATCTCCC
CTGCTCCACATGACAGGAAGATTCCTCTTTATGATTTTGCACATAGCAGAGCTGGTGATA
AAGGGGATGATATAAACTTTTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTA
AGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTCAAGTCTTCTTAATCCCTCTT
CTTTTCCCACTTCTGATGATATTGAACAAAGAAACAAATGGATCAGTGAACATGTTGAAG
TGGAGATTTATGAAGTCAGAGGGATCCATTCTTTGAATATAGTGGTTCGTAATATCCTAG
ATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCA
TATTGTGCCAGAAAGTGTTATTGCCTCTGTAATTGAACAGATGGCAAGACTGGAAAAGAC
ACGCTGACTCCATTTTCTTTATCCTGGGAGGTGATAGTAGTGACAGTGGGGTGGGGGACA
AGCTCCTGGCCTAGCTACAAGTTGGAGTATACCAGAACCTGAAGACTTACTTTTGAAATA
AAATTTGTTGTAGTACCAGTACATGTTCATAAACAAGTTGTCTGAACTCTTTATTCTGAA
ATAAAATTACTGTTGCAGAGTTTTTTACTCTTTGTGAAAGCCATGAAT
