Microarray Probes on PGSC0003DMT400000455

Probe IDChipProbe Sequence
CUST_3276_PI426222305 JHI_St_60k_v1 GCCTAGCTACAAGTTGGAGTATACCAGAACCTGAAGACTTACTTTTGAAATAAAATTTGT

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400000455

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Source Transcript PGSC0003DMT400000455 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT1G01770.1 +3 7e-54 198 106/206 (51%) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278759-282490 FORWARD LENGTH=632

Transcript Sequence (2508 bp)

>PGSC0003DMT400000455 2508 pgsc_dm_v3.4
AAAAAATAATTTCAACACAACTTATCCTATCATAACTAATCCCAACATAACTTATCCCAA
CATAACTTCTCCCATCATAACTCATTTTCAAACCAAATGACCCCTGATATTATTACTCTG
CTTACCATCTTATTAGGCCGTACAATCTTTTATTGGATGTATTTCCCTAACACAGTAGCA
CCACTATAATCTCATTTGGCTAGTTCACGAAAGATGAATTTTACTTTTAAGATCACTATC
TGCTCTCATTATCATTTCCTTCCATTTCCCTTGAGCAAGCGTTGTTTGTGAATTGCAATG
GTTTACTTTATTTAGCTGGATTGATGGATATTTCTGTTTGTTCTAACTTGGTGACTGCCT
CATTTAGGACAAGGGGTGGAAGGGCTGGGGAGAGATATCCTATGGTGGATATCAGTGTGT
TAAACGTGCTAAAGCTGCTGATTTTTTGGTAAGATCATGGATGGAAGAAGTATACCCTGG
CATAAGCAAACATATAGTTTCCTATATCATTGGACTGGATAGCCTGAAAGCTGTTAGCAT
AGATGAAGATTTGCCAAGGGATAGTCAAGATATTAGATTACGAATGGATGGTTTATTTGA
GAATAAGGAACAAGCAATCCACTTTACAAAAGAGTTCATAGCATTATATACAAATGGACC
TGCTGGTGGTGGCGGTATCAGGTCTTATTCATACCATTTATTGTGACATATTTCAGAAAA
TTGTTGAAATGAAAACGGCTATGAGTAAATTTCCTGGTGCGACAGAGGTGAAGCCAGATT
TTTTAGTTTATTGGTTCTGGATCACAATTCTGTTTGCCTACTGTGTTCTGAATTGATTAT
AAATTTGTACATATTAAATGCATTTTAATTCAATTACAGGGTTTGAGCCAAAGCTATTGG
ATTTAGCCGAATCCGTGGCCAGCACTGTGGCTCCGCCACTGCTGGTGCCTCAAATTTTTT
TCTGTTATATTCATTTATCAATAGTTAAGTTGTTGAAGTATTTCTTAGTATTAGAAAGTT
GGAAAATTAGGAAATTTTCTTTCTGTTAGATACCTATCATATAGATTGCTGTAACATAGT
GATTTTTCTTTTGTGGAGAATCCATCTCATCAGGTAAAGGGACTTCATGGTATGATATGC
TCTCATAGTAATGAGCAATTTGATCTGCACTGTTGTCTTCCATGTGGAAGTTGTAATATC
CGTCGCATGTCTTTTACTAGAGCAGTTTCTTCACTCAAGCACCTAATTTTAATACTACAA
CTCGATGCAGCATCAATCTGAGTATATTGAATCATTACCTAATAATGTGTTTTTGAATTT
TTTCCATGTGCAGAACTGTCTTTGTTTTTTGTGGTCACCAATGATCAAAGGCTTGTAATA
TCCTTCACTTCATGTTAATAATGAATGTGTCTCTGACTCTGATTATATCCCCCTCCCAGT
TTTCCTCTTGCTAGACTTAATTCCCCTTCTCGATTATGTCAAAACATATTTCCATGACAT
GTACATTATCTTCTTTTTAATATGGATAGCTGTCTCAGTATTCCTGCCTCAATTCATTTA
ATACTTCCGTATGTTAAGAACATATTTCTATGACACGTATTAATGCTCTACATCTTCTTT
TATTGTATGGCAGCACTGGACACAAAAAAGACATCATTCTTGAGAAAGCACTGGTAAAAC
GTAAAGATGTTCAGTGGCATATGACAGCAACAAGAAATAAAATTATGCAATCAGATGATC
TGGCTAGCCCTAAAAACATAATACAGACCAGTTCATTCCATGAATCAGTCTTGCAATCAC
TTACAATGGAAACTACTTTGAATCACAAAGAAGGTTCACCGCAAATTGAGCTGATCTCCC
CTGCTCCACATGACAGGAAGATTCCTCTTTATGATTTTGCACATAGCAGAGCTGGTGATA
AAGGGGATGATATAAACTTTTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTA
AGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTCAAGTCTTCTTAATCCCTCTT
CTTTTCCCACTTCTGATGATATTGAACAAAGAAACAAATGGATCAGTGAACATGTTGAAG
TGGAGATTTATGAAGTCAGAGGGATCCATTCTTTGAATATAGTGGTTCGTAATATCCTAG
ATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCA
TATTGTGCCAGAAAGTGTTATTGCCTCTGTAATTGAACAGATGGCAAGACTGGAAAAGAC
ACGCTGACTCCATTTTCTTTATCCTGGGAGGTGATAGTAGTGACAGTGGGGTGGGGGACA
AGCTCCTGGCCTAGCTACAAGTTGGAGTATACCAGAACCTGAAGACTTACTTTTGAAATA
AAATTTGTTGTAGTACCAGTACATGTTCATAAACAAGTTGTCTGAACTCTTTATTCTGAA
ATAAAATTACTGTTGCAGAGTTTTTTACTCTTTGTGAAAGCCATGAAT