Microarray Probes on PGSC0003DMT400000454
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_3208_PI426222305 |
JHI_St_60k_v1 |
GCCTAGCTACAAGTTGGAGTATACCAGAACCTGAAGACTTACTTTTGAAATAAAATTTGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400000454
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400000454 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G01770.1 |
+2 |
3e-47 |
178 |
87/129 (67%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278759-282490 FORWARD LENGTH=632 |
Transcript Sequence (2408 bp)
>PGSC0003DMT400000454 2408 pgsc_dm_v3.4
TAATTGTTTTTTTTCCAGGTAAGATCATGGATGGAAGAAGTATACCCTGGCATAAGCAAA
CATATAGTTTCCTATATCATTGGACTGGATAGCCTGAAAGCTGTTAGCATAGATGAAGAT
TTGCCAAGGGATAGTCAAGATATTAGATTACGAATGGATGGTTTATTTGAGAATAAGGAA
CAAGCAATCCACTTTACAAAAGAGTTCATAGCATTATATACAAATGGACCTGCTGGTGGT
GGCGGTATCAGGTCTTATTCATACCATTTATTGTGACATATTTCAGAAAATTGTTGAAAT
GAAAACGGCTATGAGTAAATTTCCTGGTGCGACAGAGGTGAAGCCAGATTTTTTAGTTTA
TTGGTTCTGGATCACAATTCTGTTTGCCTACTGTGTTCTGAATTGATTATAAATTTGTAC
ATATTAAATGCATTTTAATTCAATTACAGGGTTTGAGCCAAAGCTATTGGATTTAGCCGA
ATCCGTGGCCAGCACTGTGGCTCCGCCACTGCTGGTGCCTCAAATTTTTTTCTGTTATAT
TCATTTATCAATAGTTAAGTTGTTGAAGTATTTCTTAGTATTAGAAAGTTGGAAAATTAG
GAAATTTTCTTTCTGTTAGATACCTATCATATAGATTGCTGTAACATAGTGATTTTTCTT
TTGTGGAGAATCCATCTCATCAGGTAAAGGGACTTCATGGTATGATATGCTCTCATAGTA
ATGAGCAATTTGATCTGCACTGTTGTCTTCCATGTGGAAGTTGTAATATCCGTCGCATGT
CTTTTACTAGAGCAGTTTCTTCACTCAAGCACCTAATTTTAATACTACAACTCGATGCAG
CATCAATCTGAGTATATTGAATCATTACCTAATAATGTGTTTTTGAATTTTTTCCATGTG
CAGAACTGTCTTTGTTTTTTGTGGTCACCAATGATCAAAGGCTTGTAATATCCTTCACTT
CATGTTAATAATGAATGTGTCTCTGACTCTGATTATATCCCCCTCCCAGTTTTCCTCTTG
CTAGACTTAATTCCCCTTCTCGATTATGTCAAAACATATTTCCATGACATGTACATTATC
TTCTTTTTAATATGGATAGCTGTCTCAGTATTCCTGCCTCAATTCATTTAATACTTCCGT
ATGTTAAGAACATATTTCTATGACACGTATTAATGCTCTACATCTTCTTTTATTGTATGG
CAGCACTGGACACAAAAAAGACATCATTCTTGAGAAAGCACTGGTATATCTCTCCATCTC
TCTCATATATATGTGTGTGTGCATATGTGTGCTCGCGTATGTGTGTTCACGTGTGTGTGT
GTGTGTGTGTGTTTATGCGTGACACAGATTGACATTCTCTCTCTTTATTGATACTCTGTG
TTATGATATGTATACTTCGCTAGTTGTTAATTTATTAGATTTTTCTCCTATAGCTATTGA
CAGAAAAGAACAAAAGTTCTTTCCTATTGTGAGGTGGTTCCTACCTTGTGGTATTTGATC
TTTCAATGGTTGCTTCATGCTATATTGCTAATACTGTATAAATAAGTTTTAAAGAGTTCT
CTATTATCTTCAGGTAAAACGTAAAGATGTTCAGTGGCATATGACAGCAACAAGAAATAA
AATTATGCAATCAGATGATCTGGCTAGCCCTAAAAACATAATACAGACCAGTTCATTCCA
TGAATCAGTCTTGCAATCACTTACAATGGAAACTACTTTGAATCACAAAGAAGGTTCACC
GCAAATTGAGCTGATCTCCCCTGCTCCACATGACAGGAAGATTCCTCTTTATGATTTTGC
ACATAGCAGAGCTGGTGATAAAGGGGATGATATAAACTTTTCCCTTATCCCATATTTTCC
TCCAGATATTGAAAGGCTTAAGAAGATTGTAACTCAAGAATGGGTGAAAAAAGTTGTCTC
AAGTCTTCTTAATCCCTCTTCTTTTCCCACTTCTGATGATATTGAACAAAGAAACAAATG
GATCAGTGAACATGTTGAAGTGGAGATTTATGAAGTCAGAGGGATCCATTCTTTGAATAT
AGTGGTTCGTAATATCCTAGATGGAGGTGTGAACTGCTCAAGGAGAATCGATAGGCATGG
AAAGACTCTATCCGATCTCATATTGTGCCAGAAAGTGTTATTGCCTCTGTAATTGAACAG
ATGGCAAGACTGGAAAAGACACGCTGACTCCATTTTCTTTATCCTGGGAGGTGATAGTAG
TGACAGTGGGGTGGGGGACAAGCTCCTGGCCTAGCTACAAGTTGGAGTATACCAGAACCT
GAAGACTTACTTTTGAAATAAAATTTGTTGTAGTACCAGTACATGTTCATAAACAAGTTG
TCTGAACTCTTTATTCTGAAATAAAATTACTGTTGCAGAGTTTTTTACTCTTTGTGAAAG
CCATGAAT
