Microarray Probes on PGSC0003DMT400000221
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_3229_PI426222305 |
JHI_St_60k_v1 |
CCAATAAATCTCCTTCCTATATATATAGTCATGTGTGTTAGCATGTATTCCAGATTTGGG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400000221
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400000221 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G01470.1 |
+3 |
3e-41 |
113 |
50/83 (60%) |
Late embryogenesis abundant protein | chr1:172295-172826 REVERSE LENGTH=151 |
Transcript Sequence (989 bp)
>PGSC0003DMT400000221 989 pgsc_dm_v3.4
CTTTGAAGCTAAATAAATATCTATTCCTCAAGCACTACATAAATTTTCAATCTAGGTTTA
AAAATAGAAGCTAGAATGGCAGATTTCATGGAGAAAGCGATGAATTTCGTGTCGGAGAAG
GTGGGGAATATGGAGAAACCGGAGGCTGATATCACAGACTTTGATCTGAAAAAAGTTAGC
ATGGACAGCATTTCATATCATGCCAAAGTGGCCGTGAAAAACCCTTACTCTGTTCCTGTA
CCCATCATGCAGATCTCTTACACTCTCAAATGCTCCGGCAGGTCCAATAAATCTCCTTCC
TATATATATAGTCATGTGTGTTAGCATGTATTCCAGATTTGGGAAGATATTTCTATATAC
TCATGATTTTTTTGTGAAATAATTAATACAGGGTTATAGTATCAGGAACAATTCCAGATC
CAGGGAATATAAAAGCAAATGACACAACCATTTTAGATGTGCCAGTGAAGGTTCCTCACA
GTATGCTAGTGAGTTTGGGTAAGGATATTGGTAAAGATTGGGACATTGACTATAAACTGG
AATTGGGTCTCGCCATTGACCTTCCAGTCATTGGGAATTTCACAATCCCACTCTCTCATA
GCGGCGAGATCAAGCTTCCATCACTCTCCGACTTATGGAACGGTGACAAAGAAGAAGACA
CTGAAAAAGAGATCTGAAAGTAGCGCGCTAATAATAATATTACTACTAACTAATACTGTA
CTTTCATTATGGGTGTTTTTATGTATTTTGTTTGATTTTCCAAAAAGCCTAAACCCAGTT
TTGGGGTTTAATTAAAAATTACAAGTGTACTTTTCTTATTTTGTGCTGCGCGCTACACTT
TATTTTTAGTAGAACCACATGATATAATTAAGATATATATGGCACGGAACAAAGGTTTTT
ATGTGTATAGTATGTGCAACCTAACATGGGTTGTGGGTCGTGTACAGTTGTAAAACTGCT
CCACTCTTAACAGAGGTCTCAGGTTTGGA
