Microarray Probes on PGSC0003DMT400089692
Probe ID | Chip | Probe Sequence |
---|
CUST_9550_PI426222305 |
JHI_St_60k_v1 |
TGTGTGGATCTATGGTGGAAAGGGCAGCCAATTTCATTCTGCTCATTATGGAAGATTTAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400089692
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400089692 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT3G13840.1 |
+1 |
2e-150 |
445 |
261/558 (47%) |
GRAS family transcription factor | chr3:4555305-4556837 REVERSE LENGTH=510 |
Transcript Sequence (1629 bp)
>PGSC0003DMT400089692 1629 pgsc_dm_v3.4
ATGACCATTGAAGAACCTGAGCCTAATTCCAACTCCGACCCCATATCAGAGTGGTTAGCT
AGTACTTTATCCGATGTTCCATCCTTCCTCGATGAACCTTACAGTTACACCGATGATTTA
AATTTCTACGCGGACTCATGGTGGGTTCCCGATCAAGATGATCAGATCGTTAATCACAAC
ATCATCATCGACAATACTTGTAACTCATTCAACATTAGCTCCCCAGTCAACACAGCTATT
AGCAATATCCCTTTGGAGCCCATCATTTTGGATCAGCCACAGCCGGTGGATCTGTCTAAG
AAAAGGAAAATATCTGATCAAAATCCTAAGACGTCAAAGAAAAATCATAACCGTCAGATT
AATGAGGCAGAAAATGCTCATACTATAGGTGATCAAGGAGGAGTGCAAGTAAGAAGACCA
AAGAGAGTAACAACAAAATCAACCGGAAATAACAGTAACAACAAAGAAGGAAGATGGGCA
GAACATTTGCTCAACCCTTGTGCTGCTGCAATCACTGTCGGTAACATGAACCGCGTGCAA
CATCTGCTGTACGTTCTCCATGAGTTGGCGTCGTTCACAGGTGACGCCAACCACAGGCTA
GCTGCTCATGGACTCCGCGCCTTGACACATCATTTGTCTTCCCCTGGCTCATCATCAGCA
TCCTCTGGAACTATTGGAGTTACTAATTTCTCTTCTGCGAATCATAAATTCTTCAGGGAC
TCGTTGATCAATTTCATCGACATTAGTCCCTGGTTCCGAATCCCCAATAACATTGCGAAT
TCATCTGTTCTCCAAATAATTGGAGAACAGGATCGGCTAAAGAACCTTCATATCCTTGAT
ATTGGAGTTTCTCATGGTTTTCAATGGCCAACTCTTCTTGAAGAATTGACTAGGCGGTCA
GGTGGACCGCCACCACTGGTTCGCCTGACCGTTATTACACCCACAACAGAAAACGGAGAA
TTGAGAGGCACTCCATTTGTGATCGGGCCACCTGGTTACGATTTTTCCTCGCAACTGCTA
GCCTATGCTAAGGCTATCAACATTAATCTACAGATCAACAGACTGGACAATTTTCCTCTT
CAAAATCTCAATTCCCAAATCATAAATTCTACATCTGATGAAACCTTAGTCATCTGTGCT
CAATTTAGACTGCATAACTTGAATCATACTATCCCGGATGATCGAACAGATTTGTTGAAG
ATATTGAAGAGTTTGGACCCGAAAGGATTAGTTCTCAGCGAGAACAACACAGAGTGTAGC
TGCAACAGCTGTGGGGACTTTGCGACAATGTTCTCAAGGCGAGTGGAGTACTTATGGAGG
TTTTTGGATTCCACAAGTGTGGCCTACAAAGGGCGGGAGAGCGAAGAAAGGAAGATGATG
GAAGGAGAAGCAGCAAAGGCGTTGACGAACATGGGAGAAATGAATGAAAGAAAGGAGAAA
TGGTGTGAAAGAATGAGGAACGTTGGCTTTGTAAAAGAGGTGTTTGGTGAAGATGCCATT
GACGGAGCTCGGGCTTTGCTGAGGAAGTATGACAGCAATTGGGAGATGAGGGTGGAGGAG
AAAGATGGCTGTGTGGATCTATGGTGGAAAGGGCAGCCAATTTCATTCTGCTCATTATGG
AAGATTTAG