Microarray Probes on PGSC0003DMT400081977
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_28024_PI426222305 |
JHI_St_60k_v1 |
CTTCTCTTTGTACATAAGCAAGAGATATTTGTGCAATGTTCCTACTCTTCAGAATCAAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400081977
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400081977 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G32930.1 |
+1 |
4e-102 |
303 |
144/196 (73%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:13489595-13490704 FORWARD LENGTH=249 |
Transcript Sequence (964 bp)
>PGSC0003DMT400081977 964 pgsc_dm_v3.4
AAAAATCTTCACTTTCTCAGTTCAATTCACTCTTCAAATCCAATCAAAGCAATGATTCTA
CAAACTACAATCAATTCTTTCACATTTTCATCTCAACCCATTTCAAGAAACAGTTTTTTC
TTTAAAAATCTGACCTTTTTCACCTCTCCTTTGCTACCCAAATCTTTTTTACCCAGTCTT
GATTACAAGTTCTATTTGGGTAACAAAAGGAGCTCATTGAGTGTTTCTAGTGCCAAAACT
GGGTCAAAAACCATTCATGCTACTTTGCTTGAAGCTCCTGTCTTGTGGGTTGGGAGAGTT
TGTGTATTTTATGCTCTATTGAAAGCTGGTTTAGCTGGATCTCCTTCTAATCCTCTTGTT
TCAGATTTGGAGACTGATGGGAATGCTGAGTTGGGTTTTGCCAAATGGTTTGAAGAGTTG
CAAAGCAAACCAGAGAAGGAAGCTACTGACAGAAGGAAATTAGTGAGTAAATGGCATCCT
ACCACTAAGGGGACCTTACGTCGAAATTACAGGGTACCATCCAAACCTGAAGGAAAGCGC
CTTCTCAAGTCCATTGCTTCCTTGCTATCAGATGATGACCACTTCAGAGATGCCACTTCT
CACAAGGGTTGTCAGATTAGGAGGGAAAGTGCTCATGGAGAAAGTGTCTGTTGCAACAAC
GTGCGAGCATTGTTTGATGAGCTCCCTACGCCACACCTTATTGTCGAGATCACTCCTTTC
CCGGCTGGTCCTTTAACAGAAACTGACTATGCAAAGGCTGAAAAACTAGAGAGGGTACTT
AGATCAGGTCCTTCTGTCTGATTAAAGAGTGTCATGTTTAACTCCTTTTTGTATGTATTT
CTTCTCTTTGTACATAAGCAAGAGATATTTGTGCAATGTTCCTACTCTTCAGAATCAAAC
TAAATCAAGAAAATATTTACTTATGCTTTATTTTCCAGGCGTATCCTTTCTCCCATTTCT
CAAC
