Microarray Probes on PGSC0003DMT400078024
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_22646_PI426222305 |
JHI_St_60k_v1 |
TATATGTTCATGTGGGCGTTCTCCTCGCTGCTAATGGCAGAGAGTATGTTCTTGGAAGAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400078024
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400078024 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G07350.1 |
+3 |
3e-16 |
81 |
38/52 (73%) |
RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2257732-2260101 REVERSE LENGTH=382 |
Transcript Sequence (1941 bp)
>PGSC0003DMT400078024 1941 pgsc_dm_v3.4
GGGGATATCAACATCATTAAATGCTTTTTTTCTCTGGTTAGGTTGAAGATGTTCGTCTTG
TTTTTGACCCATGGACCCGCGAATCTCGTGGGTTTGGTTTCGTGACGATGTCCAGCGTTG
AGGAGGCTGATCGCTGCATCAAGTCTCTGAATCGCTCAGTACTTGAAGGCAGAGTTATCA
CTGTGGAGAAGGTAGAATTTATAGAATATTTGCTCAGTTTTTTTGAATCTTATGTTTGCA
ATTTTCTCTGGTTATCAGCTCTTAGTTATATCAATATCTTATATTGCTTCAGTAATTTGA
TCAGTTTGAAAATTGTTAGCTTGTTTCGCAAGGAAGCTGTGTGTAGCAGCTCTTCACCAA
AGTCCAAATAACAAATCAAAACACATCAAGCCAACAGACTGTTAACCAGAGGGTTGTAGC
CTTCATTTTTCCTTTATTCAGCTGCGCCCTTGTTGCATGTTATTCATTTCTCATTGGTTA
CTTATTTCGTGACGTCGTTGTATTGCATCAACCCGCCAAAGTCTAGATTTGCTGTTTGAC
AATTGTCTCCTATGCAGGCTAGGAGGAGAAGAGGTAGAACACCTACTCCAGGAAAATATT
TGGGGCTTAGAACTGTTCGCGGTATGATATTGTATCCTTTCCTAAGCAATACTTGACCTG
GGTTATTTGTCTGTGATGTCTTCTAATTTCCACCTTGTAAATGTAGTTCGTCGTGAATCA
CGAAACTATCCTCATCATTCAAGGAGTCGCTCTCCTTGTTACTCATCTGAAAGCTACAGG
AGCAGGAGCAGGTCTTACTCTCCATATTACCGACAAGAGCATAGATCATACTCTTATTAC
AGAGGACGCCAGAGATCTCACTCATCATATTACAATCGACACCACTGCTACTCAGAATCA
CCTTATTCTCCTTACTATAGTCGTGTCAGGTCTTACTCTCGATCTTTATCCCCATATAGT
CGGCGTGATCGGTCCTACTCTCCAGATGACCGTTACTACAGAAGAAGCCGTTACCATGAC
TATTCTCCCGACAATCATCGGCGTGATCGTTCCTATTCTCCAGATGACCGTTACTATAGA
AGAAGCCGCTACCGTGACTACTCTCCCGAAAGCCGTGATCTTTCGGACTCTCCAGATGTT
CGTGACAACAGAATGAGCCGCTATCGCGATTACTCTCCGAACAGTTACTATTATCGAAGG
AACCGATATCGTTCCATTTCTCGGAGCATTTCACCTCGATATCGGAGAAGCTACTCATGC
AGTGCATCACCTAGGTGGTCAAAGAGGAGCTATTCAAGAAGCGTTTCCAGGAGCAGCTGC
TCTCGTAGCAGTTACTCTCCTAATCCGAAGAAAAGCTCTAAGAAGAGTCGCAGTGTTAGT
GCATCTTCCAGATTTGTTTCAAGGTCTGTTACACCTAGGTCTTCGCCTTCATCATGAAAG
GACTACACTACTAGGAAGGTCTAGTCTGTCACTCTCTGTTGCAAAGAGTTTAAAGTTGTA
CTAGATTGGTCACTCAAGTAGAATTACTCAAGATAACAAATCTGCTTTCCAGCTTATGTG
ACTGGTGGAAATGAGATCTAGCTGTACTATTGTGTTTGTAATTTAATGCAGAGGTAATAC
GGTGTATTGACCGAATATGGAAACGACACTAGCATATTAATGTGTACGAAGCCAGTACAG
AAATCTCTCAATTTCTTCATTGCTTTCTAGTGGCTTTTATATGTTGGGTGTGTATAACAT
AGTATTTCATGGGTTATAACTTGTGAGTATTCCTGTAACTATATGCGGTGCATGACTATT
GAAGTCTTGAACTAGTAGTAATTCACACAGGTTTAAATGCTATAGCCTTGATGTAGTAGT
TACATAGCTGTTGGCCATGATTATATGTTCATGTGGGCGTTCTCCTCGCTGCTAATGGCA
GAGAGTATGTTCTTGGAAGAA
