Microarray Probes on PGSC0003DMT400076512
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_24056_PI426222305 |
JHI_St_60k_v1 |
GTTGAAAGTGCTGAAAAGTATCGAGGCTATGATATATTGTAGCGGAATTCCACAATAATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400076512
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Source Transcript PGSC0003DMT400076512 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G25275.3 |
+1 |
7e-12 |
59 |
32/66 (48%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:8860719-8861156 FORWARD LENGTH=85 |
Transcript Sequence (483 bp)
>PGSC0003DMT400076512 483 pgsc_dm_v3.4
CCACCGACAGTCTTGTCTATCTTTAATTCATACCCACTTTAAAATTAAAAGGCATCTATA
TTTATATATCTATAGAGAGAGAAAATAATGGAGAAGAAGAAAATGAATGCAGTGGCAGCC
ATGGCAATTGTGTTGATGATCCTTCTATCTTCCAACACCGACACCGTCCGCGTTGCTGCT
CAAGGCGTCAATTGCTATGACTCTTGTAACACCGCCTGTGTTGGTCTCCCATCGAGAGAG
TACCAACGTTGTGATGAAAAGTGTCGGATTAGGTGTGGACCAGATGGCAAAATTGATAGT
ACAAACCTCGGTTGAAAGTGCTGAAAAGTATCGAGGCTATGATATATTGTAGCGGAATTC
CACAATAATAATTGTATCTTTGATAATAATTTCCTCATAGTTGGGAAAATAAACGTAACC
TTTTCGTGTATGTTTAATTACTATTATGATTTTTTTTCCACTATAATAGATGATGATGGT
GAA
