Microarray Probes on PGSC0003DMT400074732

Probe IDChipProbe Sequence
CUST_4_PI426222305 JHI_St_60k_v1 TTTCTATGATTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400074732

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Source Transcript PGSC0003DMT400074732 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc01g058260.2 +1 0.0 900 453/500 (91%) genomic_reference:SL2.50ch01 gene_region:58770102-58774780 transcript_region:SL2.50ch01:58770102..58774780- go_terms:GO:0005515 functional_description:Poly(A) polymerase (AHRD V1 ***- Q56XM9_ARATH); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region
TAIR PP10 AT3G06560.1 +1 0.0 536 275/491 (56%) poly(A) polymerase 3 | chr3:2044443-2047034 FORWARD LENGTH=507

Transcript Sequence (2451 bp)

>PGSC0003DMT400074732 2451 pgsc_dm_v3.4
GCGCATCATAACACGTTTTCACCTCTAACCACACACACCAGGGACAAACAATTCTTCTTT
CTTTCCCCCGTTTTTCATTCACCATTTCCAAAATTTCACAGCACGAACAGAGAGATCACC
ATAATCCTTTCTTCATATTTTTCCCTTTACTAAACCCTTTTTGTTTTCTTCTCAATAAGG
GGTTTTTAGAAAATCAGTATCTCTAATAAGGGTTTTTGTTTGTTTCTTTTCCCTTAACCT
TTTCATACTTCATCTTCTTGAATTCCAATTGAAGATTTGTGTATGGAATTTGGGCATATT
GAAAGGCAACAATTGGTTGATCCTCGACATGTGAATACATATCTACCCAGATGGTCAATT
GGGTTGCGTCCAAACTCGAATCTTGATTATCAGGTAGGCCATTTTACCCCCCTACCCCCT
CTTGATGGGGTTTTGGGTTTTGGGGGAAACCCAGATGGGATTCTAAGAATGGAGATGGAA
AGGTCAATGTCACTCTTTCAGATTATGGGCGATGAAGGTTTAGTGCCTTCGCTAGAGGAG
GAAATGAAAAGGAGAAATGCTATTCACAAGCTCAAAAAGATAGTGAGGGAATGGGTTCAG
ACAGTGGCTTACCATCATGCACTTCCCAAAAGATACCTCAGGTTTGCCTCTGGCACAATA
TTGACATATGGATCATATGGTCTAGGAGTTCATAATTCGGAGTCTGATATTGATGCATTA
TGTGTTGGACCGTGCTTTGCAACAATAGAAGAAGACTTTTTCATTGTTCTGCGCAACATT
CTCGCGAGCAGACCAGAAGTATCAGATATCCACTGTGTCAAAGGTGCGAAGGTTCCTCTG
ATGAGATTCAAATTTGATGGGATCTCTATTGATCTTCCATATGCACGACTAAAAGTAATA
TCCATACCTGAGGATGTGGATGTATTCAATCCATTCTTCCTGAAGAATATTGATGACAAG
AGTTGGAAAAGTCTGTCTGGTGTTCGTGCAAATAGGAGAATTCTTCAACTTGTGCCAAAT
GTAGAGATATTCCAGGCAGTTCTGCGTTGTGTTAAACTATGGGCAAAGAAACGAGGAGTT
TATGGGAATTTGCTCGGATTCTTTGGAGGAGTTCATCTAGCAGTGCTTTCAGCATTCATC
TGTCAAAGGCATCCAACAGCCAGCTTGAGTGCACTTTTTTTTATTTTCTTCAAAACATTT
GCCTTTTGGCCTTGGCCGACTCCAGTAGTTTTACAAGATGGAGTTGCTTGGCCATTTATT
CCCACGGATAAAGTTTTGTGGATGCCAATCCAGTTACCATGTAGCCCATATCAATTTTGT
CATTCAAACATTGTGAGAAGTACATTTTTCAAAATCAAGAGTGAGTTCATGAGAGGGCAT
ATGCTGACTAAGGATATGTTAAGGCCAGAATTTGATTGGAACATCCTGTTTGAGCCCTTT
CCTTATCCAAGAAAATATGAGAAATTTGTCAAAATTTTCCTCTCAGCTTCTGATAAAGAT
GAGCTAGGTGACTGGGTGGGTTGTGTCAAATCACGCTTTCGCTGCCTAATTATCAAACTG
GAGGAGTTGCTGGGGTTTTGTGACCCCAACCCAACAGAGTATGCTGATGTTGATGCATCC
GAGCCCAATGCCGTTTTTTATTGGGGATTGCCACCTGCTATGACCGATATGATAAATATA
GGTCACGTGGAGGTAGAGTTCTTGAAGAGCACGAACAATGTATATCAAGGCCCAACTGGG
AAGCTGAAGTTATCAATTGTGCAAGCTGATCAGTTACCTTAAAAGGCCCACTTTGATAGT
GAGCTCCAGAGTGCAAAGCCATGTTGGAGGATTGTGAGGAGCAATCAGCGAATAGTTCCT
GCATACTACAAATACCAACCCATCTGTGTCAACGGATATTTGACCACAAATGCATGTCCC
GAGTACCCAAGTGCTGGGGGTTAGGCTGCTGCCGCCCCTTCTGTTGTTTTACACCTTCGT
CGTTTGGTCTTCCACAGAGTGAAAAGGTTTAACACAGTTTGTATTCGTGGTCAGTACAGA
GAAGAATGACGATTGTACATTTTGAGTTGTGTTACTTGTAAATCATCTCAGGGTGTAAAT
GCTTTTGCTCTTGAAAAACAGATTGAAGAAATGAATGCGTGTCCATGAAAAATGAGTCAT
GGCACATATCTTGTTATTTGATGGATCTAGTGTTGAGACCTGTATTATTTTGCTCCAGTC
TTGCAGTTGCTGCTTTACTAGCTTGTACTTGTCAAATTTATGGTAAAATAATCTCAATTT
ATGTATTGAACCTTTCTTTCTCCTCCTTCATTCACACCTTATGCTTTGGTGAGTAATGTA
ATAGGACAAGTAGTGCTATGGATGAGTGACGTTTGATCCATTTTTGGGGTATTTCTATGA
TTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC