Probe CUST_4_PI426222305 - General Information

Probe IDChip nameTranscript IDProbe Sequence
CUST_4_PI426222305 JHI_St_60k_v1 DMT400074732 TTTCTATGATTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC

All Microarray Probes Designed to Gene DMG400029059

Probe IDChip nameTranscript IDProbe Sequence
CUST_4_PI426222305 JHI_St_60k_v1 DMT400074732 TTTCTATGATTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC
CUST_169_PI426222305 JHI_St_60k_v1 DMT400074733 TTTCTATGATTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC


Microarray Signals from CUST_4_PI426222305



TreatmentRaw signalRaw Std ErrNormalized signalNormalized Std Err
Control 1h43.81518.265850.9751770.122419
ABA 1h68.75678.971411.757310.136764
ACC 1h25.48097.819230.4981250.174015
BABA 1h68.507813.49951.566580.183216
Chitin 1h32.99716.498970.8098870.155037
Epi 1h37.47376.125630.971180.160695
SA 1h55.54888.906341.211130.170293
Me-JA 1h36.76149.110490.9575040.233268
Control 6h49.623611.42891.066060.195712
ABA 6h117.77326.61032.393880.522288
ACC 6h40.10647.820730.7714180.0985324
BABA 6h48.26694.979110.9869240.10215
Chitin 6h43.772614.23310.8458970.27848
Epi 6h40.50819.39750.6686990.337043
SA 6h19.03734.136330.4391380.0977945
Me-JA 6h54.64226.468611.244740.112548

Source Transcript PGSC0003DMT400074732 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc01g058260.2 +1 0.0 900 453/500 (91%) genomic_reference:SL2.50ch01 gene_region:58770102-58774780 transcript_region:SL2.50ch01:58770102..58774780- go_terms:GO:0005515 functional_description:Poly(A) polymerase (AHRD V1 ***- Q56XM9_ARATH); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region
TAIR PP10 AT3G06560.1 +1 0.0 536 275/491 (56%) poly(A) polymerase 3 | chr3:2044443-2047034 FORWARD LENGTH=507

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400074732

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