Microarray Probes on PGSC0003DMT400059103
Probe ID | Chip | Probe Sequence |
---|
CUST_49285_PI426222305 |
JHI_St_60k_v1 |
GCTTGTAGGTTGTATAGAAAAATTGAGGTGTTCATGGTAAAAGTGTCTGGATTTCTAGTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400059103
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400059103 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G05190.1 |
+2 |
4e-20 |
96 |
44/87 (51%) |
Protein of unknown function (DUF3133) | chr5:1541853-1543875 FORWARD LENGTH=615 |
Transcript Sequence (3557 bp)
>PGSC0003DMT400059103 3557 pgsc_dm_v3.4
CGCCGATTCCAACTTCCTACTTGTTCACCTTTCCCCTGTTTCTTCCCTCCGTTCACAACA
AAGTAGCTACGGAGTATTTCTTTACAATTTCACACAGCAGGAAGAAAATATAGAAACTAC
TACTACTATATTGGAGAAGCTTAGACTTGTGGGTTGACAACCTTTCTTTTCTACACGCCA
GGGAAGACTTTTCTCTCTCTCTCTCTCTCTCTCTCTGGAAGAAGAAGAAGAAGAAAATGA
GGTCGGGTGTTGATACTTACTATAATGCTAATACTTGCCGTTAACGTAAACTTCTTCTTC
TAACTAATTTCTTTCCCAGTTTCTGCTAGCTAACATGAGTAATCAAGCAACCACTAAAGT
TCGGTTTGTTAGATGTCCCAAATGCCAATTGGTTCTTCCCGAGTTAGCAGACATTCCTGT
CTACAAGTGTGGAGGATGTGGCACAATTCTCCAAGCTAAGAATAGGAAAAGAGCTCCTAC
AAAGAACAACGTACTTGATCAGAATGAAATAAGCAGCGCAAGTGAAGAAGCTTGTCCTCC
TTTGAAAGGAGATTCTTCACCGAACGAATGGAAGAAGTCAGATCAAGGGGGCGCTGGAGA
CTATAACAAGGAGCTACCTCGACAGTTAAATTCCACCGATGAGCTTCCAAGCTCTTCTGG
GGTTAGCTGCCTTGAGAATGAAGATCCTTTATCCAAATCTGCAGTACATAAAGGAGATGA
ACACAGTTGTTCTTTGGATGAAAAGACGGAACAGTATGAAAATGGATCTCGGGATCACCA
CCAGTTTGCAGGAGGAGAAAACTTCTCCAATAGACTTGCTAGCTCAGATCAACTTACTTG
TCCAGAATTGGGAAATTCAATTGTTGAAGCGAAAGAAGATGCCGAAGGTTCAGCTATTGA
AAAGAGAGAGAAACTGGAGCTGGATAAAGACACTGGATGCTCAACCCATGAAACTGAACA
AGATATGGAAGTTTTACCCCTTGAAGTGACAGAGCAACTGGAACTGGATGAAGGCAACTT
GGTGGATGACTGCACTGTAAATGATCAAAATAGAAGCGGAGTTAATCATAAGAGTAACTC
CCTTGATGAGAATTCTACTTACTCTGGATGTGTCATTCACAGAGATAAAGTGTCTTCTGG
AAGTAGGGCACATGAAGATGGAATTGAAAGCAAATCTCTTGTGGAACAAATCATTGGAAG
GGGACAAAATGATTTCCAAGGTCACAATGCAGAATCTTCTGAAAATGTAAGGTACCCCAA
GGAAACCTCTTTATCTGCTGAGGTAGCCAGTGACTTTGAGAAGCAGTCATCTGCATGCTC
TGACATGTTCCAAAGTATTTTGAATGAAAGCATCACATCAGACACTTTGATGGCTACTGA
TTACGAGCAATTTGAGCAATTTCATAAAGAGATTCCCTCAGGTTTTGACCGTATAAGCTC
TATGGATACATTAGAAAATCAACCTCTAAATATTTATCGATCTGAGCCTCCTGTCAATCA
CAGAAATATGATCAGATCTCCTACACATAGAAGTTACTATGGCTATGATGGCAGTGCATC
TTCATGTGACGAGAATGATGATATACCTGATCAGTACAATCACCAACCTGTCAGAAAGTT
TAAGGAAGCATACCCTGTCAGCCCTGGTGAGTTTCTTTTGGATGGTAGAAGCCGAGTAAA
CCACAAAATGAGTGGTGAGTCGAAGATGGTGCAGCGAGCAATGAACTTTCCCACAGCATT
ACCAGGAAGGGGTCATCAAGCTACAGAAGGCAGCAACTGGAGTCAGAAGCCTCAGTCTAG
AAAACGTGGTCAGGCCTCTGGAGGTAGAATGACATTGGACAAGGATGAGCATGCCACAAC
ATTTCCGTTTATTTCAACAGGTTCTCATGCAGGACATAATCATGGAAACCCTTCAAATTA
TCGGAAAAATATGACCCACCATTCTGGTCTCCTTCCACCCAGAAAGCCCTCAGATTCAGA
ACCAGACAAAATACAATTGTTGAGAATGGTGTATGAACTTGAAGATCAATTGCGCCAGAC
ACGTATTACTACAAGGATGGCCAATGGAGCCAATGGGCGGTTTTCTGCAGAGCCAATGAG
GGATGAAGAGTATAACCCCTCATACTACGATCAGTTTTTGGAAGATGGTGAAGTAAGTGG
TGATTTGAACTATTCTAGATATCCTGTAAGAGGCAGTCATGGAAAAGGCTGGCCGCAACA
ACGTAAAAGCTCAAGAATACCTTTTTCTGCAGAGGTTTCACATTACAGGCACCAAGCTGA
TTGCCTGTGTTCACATTGCTCCCCTAAGGTCCGGCATTTCTCAGCGCAGCTGCATCCTTC
AGTTTGCTATAACAAAGGCCGTGGGGTTGGCTATTCCAGCTGTAACTGCTGCAATCACCT
CCAGTCTGATTCTTCAAGCCCTCAGCATTACTCAAGCTCTGAGTATTCTCGATGGGACCA
TGATACAAAATCTGATGATAGGAGGCACAAAGATCATGAGATGAAGAAACTGTATCTGCG
AGAAAAATACTCAAAAATGCGGCATCTCCGACCAGTAGCTGGTGGAGCCCCAATAATTTC
TTGTTACTACTGCAACGAACTTCTACAGCTGCCTGCAGACTTTCTTCTTTTCAAAAGGAG
ATGCCATCAGCTTAGATGCAATGCTTGTAGGAAGGTGCTGAAGTTTTCTCTCCAAAACCA
GATACATGTAGTCCCATTCCATGCAGAGGCTTTAGCTCCTCCACCAAGTGAGGTTGATGA
CAGCACTGGTGTCACTGATCATCAGAATCTGGCATATGAATATCATCTTAATTCTTGTCC
CCGTACTGAACGAATATCGTGTTCTGATGATTTGGGACCATCTTTCTGCAGAAGCATCTC
TACTGAAGGGGAGCCTTCACTACCTCCAATTCAACCTCGTGGAAGGACCTCTTTCAATGG
AGAGATATCCTCTAGTAGTTCTTATGCTCCCACAAAAGACAGAAAAATGAAATCCGTCAT
GAGGGAACCTCGTATGGGGACCTTTGGATCACCAGAGCCTTCAGCTAAGATGTCTAAGTG
GGGAAAAGTATCATCTTCAGAAATTGAGGAAGTACGACCAAACGGAGGCTCTCCTCTTCA
TCGGCTTATGGGTTATGAATCGCCAAGCGAAGTGATACATTGGTGACTGGCTCAACTTTC
AGGAAATGAAACAACGATCAAAAAGAAAGAGGCAAGTCATTAGGCAACAAAGAGCAATAG
ATTGGTAATTTTTGATAGATACTTGACATAAAGGGATCGATATTCTTGGTGTTAAAGATG
TTGAAACACAAACAATATTTCGTTTAGGCGCTCATCCATTTGTATATCCTGAGTATCATT
TTTTTCTCTATAGTTTTTCACTTCACACTATGTACAGGTGAAATCAAAGTGGCAGCTTGT
AGGTTGTATAGAAAAATTGAGGTGTTCATGGTAAAAGTGTCTGGATTTCTAGTTATTTGT
GTGATGATAATTATATGTATATTTAGAATAAAGGACATATTCAGTTTTTCTTCTTATCTT
CTAAAGTTCATTGTTTA