Microarray Probes on PGSC0003DMT400052185

Probe IDChipProbe Sequence
CUST_1071_PI426222305 JHI_St_60k_v1 CTAGTTAACAAGATCAAAGAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAAAAAA

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400052185

Click here to view details at Spud DB Genome Browser (opens in new window)


Source Transcript PGSC0003DMT400052185 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc02g094400.2 +1 0.0 536 273/309 (88%) genomic_reference:SL2.50ch02 gene_region:49509646-49511664 transcript_region:SL2.50ch02:49509646..49511664+ go_terms:GO:0006629,GO:0006071 functional_description:Glycerophosphodiester phosphodiesterase gde1 (AHRD V1 ***- B6JW52_SCHJY); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase
TAIR PP10 AT3G02040.1 +1 3e-126 377 193/310 (62%) senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361

Transcript Sequence (1586 bp)

>PGSC0003DMT400052185 1586 pgsc_dm_v3.4
AAAAATTATGCAGTTTGTTCACCACACTAAACTTTATAATACTGATCTCTCTCTATCTCT
GCTATCTTTTTTGGGGATGGATTGCAAATTAATACAGTACATTTACTGTTGCTGATTACT
TGGAGGGGAAAGTAAACAAGTAGTAAATGTCATTTTTTGTAGGTGACAAAGGATGATTGC
CCTGTCATTTTTCACGACGATTTCATCCTCACTCAACATAATGTAAGCTCTTTTAATATC
CAAATACCCTTTCTCTTCTAATAATGTAAGCTCTTTGATCTTGATTCTCATGGGTGCATG
CAGGGTACAGTTTATGAAAGGAGAATTACTGAATTGTCACTTGCTGAATTTCTTAGCTAT
GGACCCCAAAGAGAAGAGGGTGTTGCTGGAAAACCTTTAATGAGGAAAACTAAAGATGGA
AAGATTGTTAGCTGGACAGTTGAAACCGATGATTCTGCATGTACCTTAAAAGAAGCTTTT
GAGAAAGTTAATCCATCTATTGGTTTTAACATCGAGCTGAAATTCGATGATCACATTGTT
TATCAACAAGACTACCTCATCCATGTTCTTAAAGCCGTCTTACATGTTGTATTAGAGTAT
GCTAAAGACAGACCAATCATATTCTCAAGTTTCCAGCCTGATGCTGCTCTGCTTGTCAAG
AATCTCCAGACTTGTTACCCTGTGTTTTTTCTCACAAATGGAGGTACAGAGATTTACTAT
GATGTTAGAAGGAACTCGTTGGAAGAGGCCACTAAACTGTGCTTAGAGGGTGGTTTGGAA
GGTATTGTTTCCGAGGTGAAAGGCATCTTCAGGAATCCAGGACTAGTTAACAAGATCAAA
GAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAATAATGTGCCTGAAGCTGTGTAT
ATGCAACATCTGATGGGAATTGATGGAGTGATAGTGGATTTTGTTGAACAAGTAACAGAG
GCTGTGTGTAAGCTAGTGAAAAAGCCAGATGAAGTATTGCTGGAAGGGGAGGAGAAGGTT
CAAAATAGACCTCAATTCTCACAGAGGGAATTGTCTTTTCTGCTCAAGCTTATCCCCGAA
CTGATACAATAACAATTGATGATATGATTGTAGATAACCCTTTTTCTAAAGCCTGAATTG
AATGAGTGCACTCTGGGATTGTCATACTAGTGTAGATGTAGAAATGTAGATTGAGGAGTG
ATAGTGGATTCACTGTAATCATAACATATCTCCAGATACAGAAGCAAATGTTGTTTCCAA
ATCAAAATATTCTATTGCTTGTGTGAATTTTAGCTGGATAAAAAACATGATTATGAATCT
CACTTCAATTAGGTTATTAAACAGTCCGTCATTGCCAACCACCTTTTATGTTTGTTTATT
CCCATTCCCATGTTTAGTTACCAAAGATTAAGATGGATGAATAATGTGACAAATGGTTTG
AAAGGATGATGAAAGAGAGTAGGAAAACCAATTGTCCCTGTGGCTGTGAATCATATTAAT
ACTACAACAGTATTTAAATTTGACATTTAATTTCTAGAGAAAGCAAAGCAAGTGTGTGTA
GGACTATAAGGTATTTATTCTAAAAT