Microarray Probes on PGSC0003DMT400043631
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1579_PI426222305 |
JHI_St_60k_v1 |
GCAGCTTTTGACAATCATTTCTTCTGGAAATCCAAAGGAAGAAACATTTCCTAGATCCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400043631
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400043631 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc06g051460.2 |
+2 |
0.0 |
867 |
480/580 (83%) |
genomic_reference:SL2.50ch06 gene_region:31369126-31374317 transcript_region:SL2.50ch06:31369126..31374317- functional_description:ATP-dependent chaperone ClpB (AHRD V1 *--- C0GC24_9FIRM) |
| TAIR PP10 |
AT2G29970.1 |
+3 |
1e-167 |
365 |
239/505 (47%) |
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr2:12776601-12779784 FORWARD LENGTH=1002 |
Transcript Sequence (3766 bp)
>PGSC0003DMT400043631 3766 pgsc_dm_v3.4
CCCCACCAGCAACAGCAACCACCACCAGTGTCAAGCACCATCAACAAACATCTTACCCCA
CCATCTCCTACCTATTCCCTTTCCTTTCCAAAAACCTCATAAATAACTCAATGTGATGGA
TACACTTAGCTTGAATGTTTCTATTAACACCTTCTGCCAATCTATATCTCTATTTTCTTT
CTTATACTAGTGGAGTGTGAGGAGTATTAAGGATTATATATATTACTACTCCGTACTTCT
ATTGTCAGCGCTTTTTTAAAAAATAAATTAATTTATGTTTTCTTGATTACATTCCGTACT
CTGTGTTCACGTTTACTACCACAACAACAACAGCAGAGTACTTCTTCTCTTTCTTTTTGG
TATTTGCAATGCCAACGCCAGTTAATACTGCTAGGCAATGCTTGACGCATGAAGCTTCCA
TCACTCTCGACGATGCTGTAGCCATGGCAGGTCGTCGTGGCCATGCTCAAACTACATCTC
TTCATTACATATCTTCCTTACTCTCTGTTCCTTCTTCATGTTTACGTGAGGCATGTTCTC
GTACAAGGAACAATGCATACTCTGTTCGTGTCCAATTCAAAGCTCTAGACCTCTGTTTAG
GGGTTTCGATGGATCGGTTGCCTTCGTCGCCCAGCAGCAGCAAGGTAGACTATCCACCTG
TTTCGAATTCTCTTATGGCAGCCATAAAGAGGTCGCAAGCGAATCAGAGACGACAGCCGG
AGAATTTCAATTTTTATCAACAACAGCTTCAGAATCAGTCAGCTTCTTCTTCTTCTTCTT
CTTCAGTTCCAGTAGTCAAGGTTGAGTTACGGAATCTCATAATATCTGTCCTTGATGACC
CTGTTGTAAGCAGAGTATTTGGGGAAGCTGGTTTCAGGAGTTGTGATATTAAACTTGCAA
TTCTTAGACCTGTTCATCAACTCTTCAGATATTCAAGATTCAAAGGACCACCCTTGTTTT
TGTGTAATTTAACCAATCAAACCGATCGAAGTTTTAGTTTCCCCTTCTTGGGATTCTCTG
GGGGAGAAGATGATTGCAGAAGAATTGGGGAGGTTTTCGTCAATAACAGAGGAAAAAATC
CACTTATTCTTGGTACTTGTGCACAGGGTGCTATGAACAATTTCCTTGAAATGATACAGA
GTAACAGAGGAGGAGGAGGAGGAATCCTTCCTGTTGAGGTATATGGATTGAGTGTGATTT
GTATAGAGACAGAGATCATAAGGTTTGTTAGAGGAGAATATGATGAGGAATTAATGAAGT
CGAAGTTTGAGGAGATTGGAAGTATGTTGATGAATAATAGTTTAGGGTCTGGTGTTGTTG
TCAATTACGGAGATTTAAAACTGTTATCAAGCAATGATGGTTATATTGATTCTTGCAGAT
ATATTGTTAGCAAATTGACAAGTTTGCTACAGATTAATCATGGAAAACTCTGGTTGATTG
GGTGGGTAGAAAAGTATGAGATATATTTGAAAGTTTTGAATAGATTTCCTTACATAGAAA
AAGATTGGGAGTTGCAGCTTTTGACAATCATTTCTTCTGGAAATCCAAAGGAAGAAACAT
TTCCTAGATCCAGGTTGATGGAATCTTTTGTGCCATTGGGAGGATTCTTTTCTACGGCAA
CTGGTGATATTAAAAGTCCGTTAAGCAGTTCATACCACACTGCATCCCGGTGTCACTTAT
GCAATGAGAAATGCAAACAAGAAGTAAATGCTCTCTCAAAATGTGGATTAATAAGCACTG
CTTCAGTTGCAGATCACTATCAATCAAGTCTGCCTTCTTGGTTGCAAATGACTCAACTCA
ACACTAATGGAGGACTCGACCCTATCAAGTGCAGGCCAAAGATGATAAAATGGTATTGGG
TGCTAAAATTGCTGGTTTGCAGAGAAAATGGGACAATCTATGCCAGCGTTTACACTACAA
TCAACCATTACCCAAGACAAGCAACTTTCACATGACTTCTGAATTCCCATCAGTTGTAGG
CTTTCAAGTTGTTGAAGACCGAAAACAAAGTCTCAATAACGAAAACATTGAAACTAGGAG
GAAGAAAATGACTTGCACAATTTCTTCATCAAATGAAAGCAGCATTTTTCTCTCCAAAAC
GCGGTCACAAGGTGATGATGACCATGGCTTCAACTCTTCAACCTCTCTAACTTCAGTCAC
AACAGATTTAGGTTTGTGCATGGCCTCTACTTCTCCTAGCAAAGAACAAGAGCACCTCAC
AAACCACAGTAGCATTAATCAACCACATGACATATCATGCAGTGTTGAGGCGCCTCGTTT
CATTAACCGCTCTCCTCTTCAGCAGCAATTGGATCCAAAAGATTTTAAGATGCTATATGC
AGCTCTTATAGAAAAGGTTAATTGGCAAGAGGAGGCTGTAAATGCCATTAGCCAAACAAT
AGCACGGTGCAGATGTAGAAATGAAAGAAACAATTGTCCAAGTCGAGGAGACATCTGGCT
CAACTTTCTTGGACCTGATAAGCTCGGTAAGAAGAAAATTGCAATTGCATTGGGTGAGAT
TCTATATGGAAGCACAAACAACTTAATCTGTGTAGACCTAAGTCTACAGGATGAAGTCGG
GTTGTTTGATCTTCAAGTATTGAATCAATACGACATGAGATTCAGAGGGAAGCATGTTGT
TGACTATGTTGCTGATAAACTGAGGAACTGCCCTTTATCTGTTGTTTTCCTTGAAAATGT
GGATAAAGCTGATATACTGATGCAGAAAAGCTTGTCCCAAGCTGTTAAGACTGGTAGATT
TTTGGACTCTCATGGTAGAGAAGTTAGCATAGGTAATGCAATCTTTGTGACGACGTCATC
AAGATTAGATGAAGAAAGAACTCTTCCTTCTACCAAAGAAACAGCTAAGTATTCGGAAGA
AGATATATTGGCAGCTAAAGGTAACCAAATCCAGATACTAATTGCATTTGATCTTACAGA
TGATGTCAAAAGTCCAGACTCAACTGCATTGATAACAACTAGAAAAAGATCTTCTAGCCA
AATCTTTGTGAATAATAGAAAGCTTATAACTACTGGTCCAATCGAAAGTGTAGATCAGCA
ATTTGGAAGCTCGGAGATGGCCAAACGAGCCCACAAGACATCAAACACATGCTTAGATTT
GAATATTCCAGCTGAAGAGATTGAAAATTATGAGAACTTTACTGGAGATTCTGGCTGTGA
CTTTTCCAATGAAAACACCACAGCATGGTTGAAACAATTGTTTACACAATTTGATGAGAC
CGCGATTTTTAGGCCATTGGATTTAGACTCTCTTGCTGAGAAGCTATTGAAGGAGATGAG
ACAATGCTTCCACAAAATTGTCGGTCCAGAATGTTTGCTAGAGATTGACTCAAATGTAGT
GGAACAAATTCTGGCAGCAACATGTTTAAGTGACGGCAAGAAAATAGAAGATTGGATTCA
ACATGTTCTTGGAAGGGGATTTGTAGAAGCACAAGAAAGATATAGCTTAAGTGCTCGATC
TGTCGTGAAACTTGTGACCTGCGAGAGCTATCTTCAACAAGTTCATATACCAGGAGTTCT
CCTTCCTGGCAGAATCATCGTGAATTAGCTAAAATCTAAGTTTCTCTATTTATAATATGT
AATATACAGTGTATTCACATTTTAGCACACCTAGTTAATTATGCTTGTGTTACCGGATTT
ATCCCATGTTTTATTGGGCTTGTGCGGGTCACGTTTGTTATAGTTTAAGCCATAAATTGT
AAGATTTCACCTTAGCTAATTCAGGTATGAACTATTTATGTGTTAT
