Microarray Probes on PGSC0003DMT400042669
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_43181_PI426222305 |
JHI_St_60k_v1 |
CAGTGATGATCTCCAATTCCATCAAACCCACCCATCAACTACAAGAAGAAGCATTTTCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042669
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Source Transcript PGSC0003DMT400042669 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G09960.1 |
+3 |
3e-37 |
129 |
70/110 (64%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112 |
Transcript Sequence (679 bp)
>PGSC0003DMT400042669 679 pgsc_dm_v3.4
TAAACGATACAATACACATATAAGCCCCTCAATTCTTACAAAATTTCTCTATTCACTCAC
AGACTTTCTTATCTCCAAAAATCCAACTTTTTTTAACAATTTTTTTGTTTTTCTTCATTT
TCTGCATAATGGATGATCGCAAGGAGAAGACTGCACCATGGCTATCAGTGCCACAATTTG
GAGACTGGGATCAAAAGGGTGTGATGCCAGACTACTCTATGGATTTCTCAAAGATAAGAG
AGAATAGGAAACAGAACAAATCAAGAGCCAGTCTTGGAAATGAGGAAGAACTTATTTCCA
CAGCTAATAGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATC
AAACCCACCCATCAACTACAAGAAGAAGCATTTTCAGCTACTTCAACTGCTGTGTGAAAG
CTTGAAGTTGATTGGGATTGATTTTATATATTTTTCTAACTTTTCTGTAATGATAATGTT
TCAAGGTGACTTTATGGTAACTCTTCTAAGAAATAGCAACTTATTCTGGCTTTTGAAGAT
TGTGAATTCTTTTTCTTCCGACTTGAAAATTTCGTTCTTACTAGGCAAATTATGTTTAAA
AGATGTTGCAGATTGTTAACAATCTGAACTTTATAGCTTTGTTTGGTCAAGCTTTTAAAA
TCAGCTTACGACACTTTTC
