Probe CUST_43181_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_43181_PI426222305 | JHI_St_60k_v1 | DMT400042669 | CAGTGATGATCTCCAATTCCATCAAACCCACCCATCAACTACAAGAAGAAGCATTTTCAG |
All Microarray Probes Designed to Gene DMG400016551
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_43181_PI426222305 | JHI_St_60k_v1 | DMT400042669 | CAGTGATGATCTCCAATTCCATCAAACCCACCCATCAACTACAAGAAGAAGCATTTTCAG |
| CUST_43199_PI426222305 | JHI_St_60k_v1 | DMT400042667 | AATAGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATCAAACC |
| CUST_43170_PI426222305 | JHI_St_60k_v1 | DMT400042668 | GCCTTGAAAAATCGTCGTATTGCTGATATAATGTCTCTTAGTTGAAGTGAAGTTTTGTGA |
Microarray Signals from CUST_43181_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 7466.64 | 740.134 | 1.54078 | 0.160488 |
| ABA 1h | 5010.21 | 418.431 | 1.17212 | 0.128958 |
| ACC 1h | 7068.01 | 903.257 | 1.40922 | 0.0814914 |
| BABA 1h | 6241.76 | 634.892 | 1.33578 | 0.0771247 |
| Chitin 1h | 5257.2 | 303.547 | 1.21892 | 0.0914767 |
| Epi 1h | 5960.15 | 450.461 | 1.42709 | 0.0974901 |
| SA 1h | 6664.15 | 460.336 | 1.34615 | 0.0777222 |
| Me-JA 1h | 3500.63 | 202.432 | 0.892681 | 0.113187 |
| Control 6h | 3789.72 | 775.77 | 0.755317 | 0.111656 |
| ABA 6h | 1012.01 | 58.7037 | 0.197826 | 0.0114391 |
| ACC 6h | 5022.23 | 302.887 | 0.909494 | 0.0827629 |
| BABA 6h | 4310.36 | 249.6 | 0.800537 | 0.0462236 |
| Chitin 6h | 3772.23 | 218.178 | 0.737613 | 0.0456724 |
| Epi 6h | 4874.6 | 400.975 | 0.894918 | 0.143955 |
| SA 6h | 3406.71 | 253.735 | 0.713885 | 0.0412222 |
| Me-JA 6h | 3554.62 | 218.127 | 0.741393 | 0.0428093 |
Source Transcript PGSC0003DMT400042669 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 | AT5G09960.1 | +3 | 3e-37 | 129 | 70/110 (64%) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112 |