Microarray Probes on PGSC0003DMT400026191
Probe ID | Chip | Probe Sequence |
---|
CUST_1459_PI426222305 |
JHI_St_60k_v1 |
CCTTGAAACTTCTCTCCCGTACCTCAAAGGTATTTTTTCACACAATCAATAATCTATAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026191
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400026191 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) |
Solyc02g089770.2 |
+3 |
3e-163 |
471 |
229/240 (95%) |
genomic_reference:SL2.50ch02 gene_region:46055433-46058696 transcript_region:SL2.50ch02:46055433..46058696+ go_terms:GO:0004022,GO:0045551 functional_description:Dihydroflavonol-4-reductase (AHRD V1 ***- B6TK03_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain |
TAIR PP10 |
AT5G14700.1 |
+3 |
8e-58 |
199 |
98/213 (46%) |
NAD(P)-binding Rossmann-fold superfamily protein | chr5:4740502-4743327 REVERSE LENGTH=368 |
Transcript Sequence (1558 bp)
>PGSC0003DMT400026191 1558 pgsc_dm_v3.4
TTTCATATTTACCATTTTATCTACTACTTAACTAATTTATTATCTTTTGGTACATATAGA
GCTTGTATAAGTGTATATAAGTAGGCCACTCTCTAACTATGTCAACCCAGCTAAGTGGCA
GATACCCTTAAGGCTCTGAAATTTCATAATTGAGCTGCAGAAAGAGAGAGATGGATGTCG
CGATATCCTTAGAATTGGAGCCACTAAAGCAGATGAATGATCATGGAATGTTCTTTTCTA
GTGGTAATTTTATCTGCAGTTTGAATGCAAGAGACAGGAAAATTGTTTGTGTCACCAGTG
GAAACTCCTACTTTGGTTCTCACTTGATCAAGAAGCTTTTGGCATATGGTTACCTTGTTC
GAGTTATTATTCAAAATCAAGCTAATCTTGAGGACATGAAGGAGCTGATGAGGGAAGAAG
TGAAGCAACTGGAGAGTGTTGTGGTGGCAAGAATGGATGATTTAGATAGCCTCTGCAATG
CTTTTAGAGGTTGTCATGTTGTTTTCCACACATCATCTTTCGTTGATCCGCGAGGGATCT
CTGGATACACGGAACGAATGGCATTTATTGAAGCTGAAGCAGCAAAGAATGTCATAGAAG
CTTGTGGCAGGGCAGCATATGTTAAAAGATGCATTTTCACCTCTTCTCTACTTGCATGCA
TCTGGAAAAATGACCTGCCAAACCTCATAGATGAGAGCTCTTGGAGTGATGAGACATTCT
GTAGAGAACACAAGCTTTGGCTAGCCTTGGCCAAGACCAGGGCAGAAAAGGTTGCTTGGA
GGAAAGCAAGGGAGATGAAGGTGAAACTTGTTACTTTATGTCCTGGACTTCTCATGGCAC
CATCTTTCCCAAACGCTCACCTTGAAACTTCTCTCCCGTACCTCAAAGGTATTTTTTCAC
ACAATCAATAATCTATAACTTCAAATTTTCCACTTAATTGAGGATTGGAAAAGAGCTTAG
CAATTGCAACTCTATTTTGCATCAAATTTCACATTTAATTTTATGGATCAAACTAATAAA
ATAGATTGAGAATTGATCGATTTGTTTACTAACTCGAAGAAATGTTCACTTGTAGGTGGC
TATTTCATGCTAAGACAAGGAATTCTAGCAACTGAAGATGTAAGTAAAGTGGCAGAAGCA
CATATTTACGTCTATGAAGATATGGACTATGGAGCGTGTGGAAGATATATTTGCTTTGGA
AATATAGTTGGAACATTGGAAGAGGCCATACAACTTGAAAATGGCTTGAATATATCTGGC
CACTTGTCTGGGGATCAAAGCCCTCTTGCAGTAGCAGTTGAAAATAATGAAATTCCTCCC
AGAATTACTAAGTCAAAGCTCAGTAGATTACTATTCCATGCGTCACAACGCCTTCCTTGC
AAACACTGAATAGTAATATTTGTATGGTACTTACCTCAAAATATTATTACAAAAAAGGTA
GCAATTGGAGAAGTGTAGTCAGGAATTTATATAAAGGTAATGTCATGATTGATAATCGAA
TTTGTGAGCAGAAGTTATTTTTCAGCTCAATTTACCACAACACTATATTCAATAATTT