Microarray Probes on PGSC0003DMT400026181

Probe IDChipProbe Sequence
CUST_1405_PI426222305 JHI_St_60k_v1 AAATACAAACTTGGTTTGCTCACATATCATGATTTGCACATTAGGGACCCGAGAATCATG

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026181

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Source Transcript PGSC0003DMT400026181 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc02g089840.2 +3 1e-147 433 227/248 (92%) genomic_reference:SL2.50ch02 gene_region:46129231-46130747 transcript_region:SL2.50ch02:46129231..46130747+ functional_description:Transcription factor (AHRD V1 **-- D7MBD5_ARALY); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607
TAIR PP10 AT2G23790.1 +3 3e-54 191 88/135 (65%) Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336

Transcript Sequence (2090 bp)

>PGSC0003DMT400026181 2090 pgsc_dm_v3.4
CAATTTTAATCAATTCTCTTTATCTCAGAAAGCTTCTTCGTCTATCAATGGCGTTCAAAA
AAATTGTAGCCCAACGTCTTTTCGATTCATATAAAATTACTCGTCCTTCCCTAACAACAT
GCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAG
CCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGGTCTCTCCACCGAAGTTCTTTGTTCC
AGTCACTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGG
AATTGAGAGGGATGGACATTGGTAGAGATAGGATCAGACTCGATGGACTCATCTCACCGC
CGCAGCAGAAATCGTTGCCGGAGATGGAGTCAGAATTAGCCGAGGAGGAGAAATTTACGG
TGGCCGATGCAAAGAAGGTTATGAGATTGGCACAGCTTGAGGTGGTGAAATCGAGGCTAA
GGGAGATGGAGAATGACTGGATTTCGTATCCGGAATTTTTTCAGATCTGCAACGGCGCTT
CTTCAAACTCCGATCAAGCCCTAGAATTCGCAAAGATGCTCGATCAATCGGGAATTGTAA
TTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGAAAGCCAACAAAGTTATTCCA
GATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAA
CACCCAAAATTACACCATTGAACACCCTTTCCTCTTTTAAACTTAATTCCAAACATTTGG
GAAGAAGATGATGTTTGGCTTAAAAAGTTTTTTAGTTTTGCAATAACTAAAATTGTTATT
TACTGCAAAAAAACTTGAACCAAACGTAAGCTAATAGTTTGGGTGGGGATGGGATAAGAG
AAAGGAAAAAAGGACATTCAGGTTCAGTAGAGTCCAAAAATTAGTAAATCCTACCCCAGA
AAGAAACGAAATACAGCTATTCCCTTAGCTCCTCTAGTTGTCTTTTCTAATACTTGACGC
AAGTGACAATTTGCCTGCCTTGTCATAGGAATAGACACTGTTTTAGTTAAACAGATTCAG
AATTTTAAGTCTGTGTCTAAGTGCGTGCGTGGTTGTGTCTAATAATATAGATTAGTGAAT
CCAATTTAGATGAATGCTTGCAAATGGGAAGATGTTTCTCATTATGTGATAAGGCGTGTG
AAGTGGAGTTCTATTGTTTTACACAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGG
TGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGA
TGAAGGAGTTTCAACAAATGGATGAGAAGAAATCAGCTATTGACAAGAAGGCAGAGTCGT
TGGTGCAAAGGGAGTTGTGGTGTGGGCTAGGATTCTTTGTGATTCAGACTGCAGCTTTCA
TGAGGCTCACTTTCTGGGAGCTAACATGGGATGTAATGGAGCCAATTTGCTTCTATGTTA
CATCCTTTTACTGCATGGCTGGTTATGCTTTCTTCCTAAGGACATCCAAAGAGCCTACTT
ATGAAGGCTTTTTCCACAGCCGGTTTAGCGCAAAACAAAAGAAGCTCATGAAGCTTCACA
ATTTTGATCTTCAGAGGTACAATGAACTCCGCAAAGCTTGTGATCCTCACTCGTCCATAC
CTACTGGAAACACTTTAACACTTCATTCAACACCCATGATGTCCACAGCATAGAATGTGG
TGATTTTACATGAACATGTTGTGCGTAAGATGGATATTTTTTAGGAATACTGCAAGAAAG
AGGAACCTAAAATTGGAAAGGACAGATGATATACTTTGCTAATTTTTTTTTCTTTTACTT
GTTTTACTTTTAAGTTAGTGTCGAATGGATACTTCGAGCTGATCCCAATTGATGTGGGAC
TGAGGCGTCGTTGTTGTTGTTTACTATTACTTTGGACCTAGACTAACTTTGAGTTTATCT
ATGTCACGGCTAATGTATATTAAGTGAAGAGGGCACAGAAAATTTATAGAAAATACAAAC
TTGGTTTGCTCACATATCATGATTTGCACATTAGGGACCCGAGAATCATG