Microarray Probes on PGSC0003DMT400024176

Probe IDChipProbe Sequence
CUST_276_PI426222305 JHI_St_60k_v1 GCAATACAATTGTTTTGTTGTACCATACACTCCAGCAGAGTTTTGGAGTATTATTTGACT

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400024176

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Source Transcript PGSC0003DMT400024176 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc04g076300.2 +3 0.0 1164 629/669 (94%) genomic_reference:SL2.50ch04 gene_region:58808337-58816333 transcript_region:SL2.50ch04:58808337..58816333- go_terms:GO:0005216 functional_description:Transporter small conductance mechanosensitive ion channel (MscS) family (AHRD V1 *-** A7ZLG1_ECO24); contains Interpro domain(s) IPR006685 Mechanosensitive ion channel MscS
TAIR PP10 AT1G58200.1 +3 0.0 639 362/622 (58%) MSCS-like 3 | chr1:21548370-21552488 REVERSE LENGTH=678

Transcript Sequence (2399 bp)

>PGSC0003DMT400024176 2399 pgsc_dm_v3.4
GGAGCATCTGCTGCAATTATTCTACAAAACTCTCTCTTAAACTATATTATAAGTCGTGGT
TGTAGATTCATTGATAATTTTTACTGTCTCATTGACACTTGATATGTGGTGTACTGCATC
TTCAGCGGCAGGATCCTTGGAGCATCTACCTTCTGAATACTGTACACAGGCCTTTATTTT
TCCATCCTTCACCAACTAGATGTAATGTATTACTATGCCGCTCCTTGCTAAAGCCAGGTG
GAGGATATGAGAGTCAAGTTCTGGAAACAGCAACACTAATTTGGAAACGGTCATTAAGTA
CTATACATGGAAGCCCACTTGTGCTTCAGCTGATTCCGGCCATTGGTGTTCTTGTTTTTG
CTGCATGGGGTCTCACTCCACTGATGCACTTTGGAAGAAAGCTTTTCCTTCATGAAAGTG
ATAGCAATTGGAAACAAAGTAGCTGGCATTATGTTACAACTTCCTATCTTAAACCCGTGC
TTTTATGGACTGGAGCAATACTTATATGCAGAGCAATAGATCCACTGGTTCTACCTACAG
TTCCTAGCCAGGCAGTCAAGCAAAGATTTCTTAATTTTATACGATCATTATCGACAGTGA
TGGCACTTGCCTACTGTTTATCTAGCTTGATTCAGCAAACACAAAAATTCCTCGTGGAGA
CAAAAGACCCTGCTGATGCAAGAAATATGGGGTTCGAATTTGCAGGGAAAGCTGTATATA
CTGCAGTATGGGTTGCAGCCGTTTCATTGTTCATGGAATTGCTTGGTTTTTCTACACAGA
AGTGGCTGACAGCTGGGGGTCTTGGGACAGTATTGCTCACTCTTGCTGGTCGTGAGATAC
TTACAAACTTCCTCTCGAGCATAATGATCCATGCAACAAGGCCCTTTGTTCTAAATGACT
GGATACAGACTAAGATACAGGGATATGATGTCTCTGGTACAGTGGAGCACGTAGGTTGGT
GGTCACCAACAGTCATAAGAGGTGATGATCGTGAAGCAATTCACATACCAAATCACAAAT
TTTCAGTGAATATCGTCAGGAATCTTACTCAGAGGACTCACTGGCGGATCAAGACTCACC
TTGCCATCAGCCACTTGGATGTGAATAAGATCAATAACATTGTTGCGGATATGCGGAAGG
TTTTGGCGAAACATCCTCTAGTGGAACAGCAACGATTACATAGACGAGTTTTTCTGGATA
ACGTTGATCCAGAGAATCAGGCTCTTAAGATATTGATTTCTTGCTTTGTGAAGACTCCTC
GTTTTGAAGAGTACCTCCGAGTGAAGGAAGTTATATTGCTGGATCTCCTTCGAGTAATCA
GCCATCATCGTGCTCGACTTGCTACACCTATTCGTACTGTGCAGAAAACATCTCGTGAGA
TTGATGTGGATGATGTACCATTTGCTGATTCCATTTTTTCTCGTAACCGGCCTAACCGCC
AAGTCCTCCTTATTGAGCCTTCTTATAAGATCAGTAGTGACGATAAAGCCAAAGCTTCTG
CTCGTTCAGTACAATCTGATGAAGAAAAAGACCAAAAGGTTGAAGCACCAAGTACATCAC
GGGGCGCTGATGACACAAATGACAAGCCATCAACTCTTGTTGAGAAGGAAGTCGTTAAGG
CCTCATCAGCATCAAATGCTAATGGTGATTTAAAAGCAGCAACTTCGCCATCAGATGGAA
AATCACTAAAACAAGGATCTGCCAGTCCAGTTAAAAGCAACTCTGAGAAAAACCAAATTG
CTTCAGTTGCTGGAGACCCACCGGGGTTGACATCAGATACAGCCATTGAGAAGACAGATA
TGGCATCTTCTGCTTCACAGGCACAACAAGATACTGAAAGACCAATTTCTTCACCACCTT
CAGTTGGAAGGCCCATGTTAGAAGACAACATTGTTCTTGGTGTTGCACTGGAAGGGTCAA
AACTAACACTTCCAATTGAGGAAGAAACGACTCCACCCTCTCCCTCTCCAACATTTTTTG
ACTCAGAATCAAAAGAGTTAGCTGCCTGCCGGAATGGAAATAGCTCGACCAACTCAAACA
AAGATAAGACGGACGATAAAATGCCAGGAGCTCCAAGCACACAAAGTACATCAAATGACC
AGAAAGAACGCGAAAGGTGATTATTTGAAGGTTCAACAATGTGCAATAATGCGCTAAGGC
TATTTTTTAGAGCTTGCATTGTGCACACTGTAAATGTTTCTCATGAAATTTATTATATAT
AATTGTGGAGCAGTAGTTGGCTTGTATTTAGCATTTGGTAATGATCAATGAAGGCACAAT
AAATACCACTAACTTTTAGCTTAAGGCTTGGTCTGACCATACACCATCTTTAGCTTGCAA
TACAATTGTTTTGTTGTACCATACACTCCAGCAGAGTTTTGGAGTATTATTTGACTACA