Microarray Probes on PGSC0003DMT400003459
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_802_PI426222305 |
JHI_St_60k_v1 |
TGTAGATATCGTCGAAAGTGAATGAGTTTAGTTGAATTCAAAGGCGGACCGCGGACCTAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400003459
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Source Transcript PGSC0003DMT400003459 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g089080.2 |
+2 |
3e-37 |
135 |
73/110 (66%) |
genomic_reference:SL2.50ch02 gene_region:45561116-45563543 transcript_region:SL2.50ch02:45561116..45563543+ functional_description:Rapid alkalinization factor 5 (AHRD V1 *-*- Q6DN46_SOLCH) |
| TAIR PP10 | None | - | - | - | - | - |
Transcript Sequence (1085 bp)
>PGSC0003DMT400003459 1085 pgsc_dm_v3.4
TAGGTAGTTGAGGTTGACCATACATAGCTGGTGGATGCTGGGGTTTCCACTAAATGAAGG
TAGGACATAGGACATAGGACAAACAAAGACTATCAAGTCAACTAAGGAAAAAAGGTGTCC
ATTCATCTCTTATCCCATGGTGTGGGCATTAACTGTATCAGCTCACATCTATTAGGAGTC
TATTTAAACAAAACATCAAAGTGAGAAAGGAATAGTAACTCTATCAATTCTTGTAAAAAC
AAATTCCAATATAATATATACCATGGAAAGGAAATGTTACAAGAAGATGACGACGATGCT
CGTTGTGCTACTTGTAACCATAATAAAGGTGCAAGATGTAATTGCGGCATTAGAATGTAA
TGGGACAAGCAGCAACATAGGTGATTGTATTGGAGATGTTGATGAATTCTTGATGGAATC
AGAAACAAGCACTATGATTCTTGCTGGCAAACATCTATCTATAAACGCGCCGGGGGATAC
AGCAAAGATATGTGAGGAATCAATTTACGGTAATTGCATCGATAATCCGAACGTTGTGGC
AACACGCTGCAACTATGGTACCCGCTGCAATCGTGAAATATCCTAGTAAATATTTATGTA
CAAGTCTCCAAGGGCATCGTTTGCTTTACTTGAACCAATAATATCTTCTCTTGTTGAAGA
AACTACTTGTTTTTACATTTTGTATAAATATTGTCTCTTGAGTACTAAATTGATTTTATC
TTAACAGAATGCTTTAGTATGTCTCCAGTTCAATAACTCGATTAGAAACATCAGAAACAA
AGCACTCACCAAAATCATCACTTTCAGACAACATGGTAGAAATGTATAAACATATGTGAT
TCTTATTACATATATATGTAAACGCAATTATAGCCATAAACTGCATAAACAGCACACATA
GACTTTGGTTCTTTGTGGCAGGGTCTATATGTAATTGTAGATATCGTCGAAAGTGAATGA
GTTTAGTTGAATTCAAAGGCGGACCGCGGACCTACCCTCTAGGGTAGGGGTCCATGGATA
ACTTTGTACTATATTTTTTTATAAGCACTCCTAGCGAACAAAGGTAAAGTGGTTTCACTA
GTTGA
