Microarray Probes on PGSC0003DMT400001358
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1235_PI426222305 |
JHI_St_60k_v1 |
GTTGTTTCATTCACAAAGATTTTCATGATGTCGTTGACAGAATGAGTCTTCTCAACAAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001358
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001358 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g087110.2 |
+2 |
0.0 |
1209 |
593/634 (94%) |
genomic_reference:SL2.50ch02 gene_region:44197070-44202789 transcript_region:SL2.50ch02:44197070..44202789+ go_terms:GO:0016165 functional_description:Alpha-dioxygenase (AHRD V1 **-- Q5GQ66_PEA); contains Interpro domain(s) IPR002007 Haem peroxidase, animal |
| TAIR PP10 |
AT3G01420.1 |
+2 |
0.0 |
923 |
447/624 (72%) |
Peroxidase superfamily protein | chr3:159689-162726 REVERSE LENGTH=639 |
Transcript Sequence (2359 bp)
>PGSC0003DMT400001358 2359 pgsc_dm_v3.4
CGTGCGTTTATGCTTTTATACTTATCTCTATATATATAGAAGGGATATGTTTCCTCCAAA
ATTAAGCATTTAGAGCCCTATATATATTACAAGTGATTTCTAGCTTGTAGGAAATTAAAT
TAACAATATGTCTTTTGTTAATCTCTTGCTATTTCCTCTTCGTTGTTTCATTCACAAAGA
TTTTCATGATGTCGTTGACAGAATGAGTCTTCTCAACAAACTTTTGTTTATGATGGTTCA
CTTGGTTGATAAATTGAACCTGTGGCACCGGCTACCGGTGTTCTTGGGGCTACTTTATCT
CGCAGCACGGCGACATCTTCATCAGGAATATAATTTGATCAACGTCGGTGTCGGTAGAAA
ACCTATCGACGTTACATCAAATCGGGCCGTTGGAAAATACAACGACCCTTTTAATGAAGG
AGGTGGCAGTGAATTTCCTTTCTTTGGTAGGAATATGATGCCTGTTGATCAACATGAAAA
GTTAAAGAATCCAGATCCTATGGTAGTTGCAACAAAGCTACTAGCACGCAGAAAATTCAT
AGACACAGGAAAACAATTTAACATGATAGCTGCCTCATGGATACAATTTATGATTCATGA
TTGGATCGATCATTTGGAAGATACTCAACAGATTGAGCTAAGGGCACCTGAAGAAGTTGC
AAGTGAGTGTCCTCTCAAGTCCTTTAAGTTTTTCAAGACCAAGCAAACTCCTACGGGTTT
ATGTGATATCCAGACTGGTCACTTGAACATTCGTACTCCACAATGGGATGGAAGTGCTAT
TTATGGGAACAACGCAGAAGTTTCAAAGAAAGTGAGGACATTTAAAGATGGAAAATTGAA
ACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATCATCTCTGGTGATGT
TCGCAATAATTGGGCTGGACTTTTGTCACTGCAGGCACTCTTTGTTCAAGAGCATAATCT
TGTTTGTGACACCTTGAAGAAAGAATATCCAGAATTGAAAGATGAGGACTTGTATCGTCA
TGCAAAGCTTGTCACTTCTGCTGTAATTGCGAAAATTCACACCATAGATTGGACAGTTGA
ACTTCTCAATACCGACACCCTTCTAGCAGGAATGCGCGCCAATTGGTATGGATTGCTAGG
AAAGAAATTCAAGGATACATTTGGGCATGTTGGAGGTTCCATTTTAGGTGGTTTTGTGGG
AATGAAGAAACCTGAGGATCATGGTGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGT
CTATCGGATGCATCAACTCCTACCTGATACGCTTCAGCTAAGAAATATCGATGCCACGCC
TGGACTAAACAAATCTCTTCCTTTGACTAATGAGATCCTGATGGAAGATTTAATTGGGGG
TAAAGGTAAGGAGAATCTATCAAGAATCGGGTTTACTAAGCAAATGGTTTCAATGGGCCA
TCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGC
CCAAGATGTCGATGGAACTGACAGGCCACATCATATTGACCTTGCAGCTCTTGAAATTTA
TAGGGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGTAGGAGAATGCTTCAAAT
TCCCATCTCCAAATGGGAAGATTTGACAGATGATGAGGAAGTCATTAAAACTCTTCATGA
AGTTTATGGTGATGAAGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAA
GATTAAGGGATTTGCCATCTCTGAGACTGCCTTTATCATATTTCTAATCATGGCATCAAG
AAGGTTAGAGGCAGATAAATTTTTCACCAGCTATTACAACGATGAGACATATACGAAAAA
AGGACTTGAATGGGTGAATACAACAGAAAGCTTAAAAGATGTACTAGATCGACATTATCC
AGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGGACTCGTCTCC
AGAACCTCACAATCCTATTCCACTCTACTTTCGCGTTCCTCGGACATAGGCCCCTTCTCA
TTATACTTAAAATCAAAATAAAAAGAAGTAAGATGTGTGTCGATTATTTTTTCACCTGCA
AGTGCGTATTATGATTTCCATGTACTATCTTCACTACTTGTTTCATTCACTGAGCCGTTT
TATGAAACTATATATATCAGATTGTAATATGAATTTCCTGATATTTTTGTCCAATAAAAA
AAGAGAAACATGTGGTTTGTTTTATATCTAAGAGTCTTTTCTACATTTTTATTGTTTCAA
ACACATACTTTAACCAACAAACTTGTATAATTGGCTGAATTGAACAATTAGCATTCTTGT
ATTATATAGTGAATTTGGC
