PanBaRT20 Gene Atlas Downloads
The text files are in tab-delimited format and can be opened in Excel. To save on file sizes the individual files in panbart20_all_tpm_files.zip have an experiment id column which relates to the experiment names in the panbart20_metadata.xlsx file. The meta-data spreadsheet has more details of the experiments.
| Description | Download File |
| All TPM values from the PanBaRT20 Analysis (1.9 GB) | panbart20_tpm_quant_files.tar.gz |
| Meta-data for the RNA-seq experiments | panbart20_metadata.xlsx |
PanBaRT20 Downloads
You can download the FASTA and GFF files for PanBaRT20 here, plus annotation using BLAST and TRAPID
| Description | Download File |
| Barley PanGenome Reference FASTA Sequence, used in PanBaRT20 (note: large file) | PSVCP_20Pangenome_21.05.fasta.gz |
| PanBaRT20 transcripts FASTA file | PanBaRT20_renamed.fasta.gz |
| PanBaRT20 transcripts GFF file | PanBaRT20_renamed.gff3.gz |
| PanBaRT20 protein translations, FASTA file | PanBaRT20_transuite_transfeat_pep_renamed.fasta.gz |
| PanBaRT20 Top BLAST Match in Rice Predicted Peptides v7 (tab delimited) | panbart20_vs_rice_blast_output_tab.txt.gz |
| PanBaRT20 Top BLAST Match in Arabidopsis Predicted Peptides v10 (tab delimited) | panbart20_vs_tair_blast_output_tab.txt.gz |
| PanBaRT20 TRAPID Annotation (tab-delimited) | proteins_panbart20_renamed.transcriptAnno.txt.gz |