barSeed - Barley Seed Development Database

Probe CUST_9917_PI390587928

Source Contig U35_15447

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9917_PI390587928	Hv_44K_v2	TTCAAATCCATGCTGTTGGCCTGCTGCTGTTTCTTTCCGAGCAATCAATATGCATGGAAT	947	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57578.2	1184	2e-24	1100 - 1159	100	60 / 60	plus	ABC03334 ABC03335 ABC03337 ABC34542
JLOC1	JLOC1_37340.1	1365	8e-25	1016 - 1075	100	60 / 60	plus
Harvest35	U35_15447	1046	3e-25	948 - 1007	100	60 / 60	plus

Contig Sequence (1046 bp)

>U35_15447 1046 Hv_44K_v2
ATTTAACCCCCCACGTCAAAAAAATCGATTTCGCCGTCCTCTTCGCTGCGCCGCCGGCGA
GGGCCCGGGCCGACTACGACTACCTCATCAAGCTCCTCCTCATCGGGGACAGCGGTGTTG
GCAAGAGTTGCCTCCTTCTGCGGTTCTCTGATGGCTCCTTCACTACGAGCTTTATTACCA
CGATTGGTATTGACTTTAAGATCAGAACAATAGAGCTGGATCAGAAACGTATTAAGCTAC
AAATATGGGACACGGCTGGTCAAGAACGGTTCCGGACTATTACCACTGCGTATTACCGTG
GAGCCATGGGTATCCTGCTTGTTTATGACGTCACCGACGAGTCATCTTTCAACAACATAA
GGAACTGGATCCGGAACATTGAGCAGCATGCCTCTGACAACGTCAACAAAATTTTGATTG
GCAACAAGGCTGATATGGATGAGAGTAAAAGGGCTGTACCTACTGCGAAGGGGCAAGCTT
TGGCCGATGAATATGGCATCAAGTTCTTTGAAACTAGTGCCAAGACAAACCTGAACGTGG
AGCAGGTTTTCTTCTCCATTGCCCGCGACATTAAGCAGAGGCTTGCCGAGACCGATTCCA
AGCCTGAGGACAAAACAATCAAGATTAACAAGGCAGAAGGCGGTGATGCGCCGGCAGCTT
CGGGATCTGCCTGCTGTGGCTCTTAAGGGATGGATGATTGAGTGTGTCGGTGATCATTGT
TTATTTGACATCATTCGGTTCCCGCTGCTGCTGCTGCTTGTCTGTTATAGGAAGAATGTC
AATCAAGAAGAAAACTATGACTTATGATACAGATCTGGTTGTACTTATATTCGCTTCCCA
TTCTTTGAAGCAACTACCCTTGCCTTTGACGTAGCTGTTGCAATTGCTGGGAGCTATTGT
ACGCTGGATTTCAGTCCGTTGAACCTCTCGCTACAGTGTGTAATGATTTCAAATCCATGC
TGTTGGCCTGCTGCTGTTTCTTTCCGAGCAATCAATATGCATGGAATAAAAAAAAAAAAA
AAAAGATAAAACAAAAAAAAAAAAAA

Homology of Contig U35_15447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38630.2	217	2e-105	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g23120.1	215	1e-107
Arabidopsis v10	AT3G46060.1	216	1e-99	\| Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A \| RAB GTPase homolog 8A \| chr3:16917908-16919740 FORWARD LENGTH=216