barSeed - Barley Seed Development Database

Probe CUST_9795_PI390587928

Source Contig U35_47101

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9795_PI390587928	Hv_44K_v2	GTAAGAAAGAGTTTGTAAGACACTCTTAAATGATCATATCAAGGAAGACCATGCAGATGA	19	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363357	2012	2e-24	1944 - 2003	100	60 / 60	plus	ABC04592 ABC04593
MLOC	MLOC_63837.1	389	2e-24	135 - 194	100	60 / 60	plus	None
MLOC	MLOC_63838.1	2056	2e-24	137 - 196	100	60 / 60	plus	ABC11667 ABC11741
JLOC1	JLOC1_41857.1	2064	8e-25	1867 - 1926	100	60 / 60	minus
Harvest35	U35_47101	224	3e-25	20 - 79	100	60 / 60	minus
Harvest35	U35_1692	1688	3e-25	1605 - 1664	100	60 / 60	plus
Harvest35	U35_1690	739	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (224 bp)

>U35_47101 224 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCATCTGCATGGTCTTCCTTGATATGATCATTTAAGAGTGT
CTTACAAACTCTTTCTTACATAAATGATCAATTGGAGGAAACACAAAACCAGACGGCTCG
CCTCATAAGTCACGACTCATAAGGATACATATGAATGGTATAACATGGTAGCACAAGAAA
GTGCCACCTAGCTTAGAACACATGATGGGGGGGGGGGGGGGGGG

Homology of Contig U35_47101 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None