barSeed - Barley Seed Development Database

Probe ABC04593

Source Contig ABC04593

barSeed

Links

Affymetrix Source Sequence (1650 bp)

>ABC04593 1650
CAGACCCACAAGTCAACCGGCGCGCGCTACGCCTGCAAGTCCATCGCGGCCCGGAAGCTG
GCCCGCGCCGACGACGTGGAGGACGCGCGGCGGGAGGTGCAGATCATGCACCACCTCACG
GGCCACCGGAGCATCGTCGAGCTGCGCGGCGCCTACGAGGACCGCCACTCCGTCAACCTC
GTCATGGAGCTCTGCGAGGGCGGGGAGCTCTTCGACCGCATCATCGCCCGCGGCCACTAC
TCCGAGCGCGCCGCCGCCACGCTCTGCCGCGAGGTCGTCAGCGTTGTCCACAGCTGCCAC
TCCATGGGGGTCATGCACCGCGACCTCAAGCCCGAGAACTTCTTGTTCTTGAATAAGCGG
GAGGACTCCCCGCTCAAGGCCACCGATTTCGGGCTCTCCGTCTTCTTCAAGCCCGGCGAG
CAGTTCAGGGATCTTGTTGGGAGTGCCTATTATGTGGCTCCGGAGGTGCTGAAGCGCCGA
TATGGAGCCGAGGCCGACATTTGGAGTGCTGGGGTGATCCTCTACATCCTCCTATCCGGC
GTTCCTCCATTCTGGGCAGAGAACGAGGAAGGTATATTTGATGCTGTTCTGAAAGGTCAC
ATTGATTTCTCGTCCGATCCATGGCCATCGATTTCAAATGGGGCTAAAGACTTGGTCAAG
AGGATGCTACGGCAGGACCCCAAGGAGCGGCTCACGGCTGCTGAAATTTTGAACCATCCA
TGGATTAGAGAGGATGGCGAGGCCCCAGACAAACCACTTGATATTACAGTGATCAGTAGA
ATGAAGCAGTTCAGGGCGATGAACAAGCTTAAGAAGGTTGCCTTGAAGATTGTTGCAGAG
AGCTTGTCAGAGGAAGAGATCGTGGGCTTAAGAGAAATGTTCAAGTCCCTGGATACTGAT
AACAGCGGGACAATTACCCTGGATGAACTAAGGGCTGGCTTACCAAAGCTTGGGACCAAA
ATTACTGAATCAGAAATAAGACAGTTGATGGAGGCGGCTGATGTTGATGGAAATGGGACC
ATTGATTATGTTGAATTCATATCGGCAACAATGCACATGAATAGACTAGAGAAGGAAGAC
CACATATTTAAAGCATTCGAATACTTTGACAAGGACCATAGCGGGTACATAACAGTTGAT
GAGCTGGAGGAAGCGCTGAAGAAGTATGATATGGGTGATGAGGCAACAATCAAAGATATC
ATTGCTGAAGTGGATACAGATCATGATGGGAAAATTAACTACCAGGAGTTTGTTGCGATG
ATGAAGAATAACAGCCCAGAGATTGTTCCAAATCGACGGCGCCTATTTTAAGTCTTGCAA
TGGTTTATGCGAAGCTTGCGATTTCTGTGAATGCGTTGACACAGGTGACCAATCAAGATC
TTAATTGGCGAGGAATGAGCGAAGCCATTCATGCTCGGCACGATTCAGTGAGGTATCTGC
AAGTGATCCTTTATACTTGGACATACTATCCGTCATCGAGAACTCCCCCCCATCATGTGT
TCTAAGCTAGGTGGCACTTTCTTGTGCTACCATGTTATACCATTCATATGTATCCTTATG
AGGCGAGCCGTCTGGTTTTGTGTTTCCTCCAATTGATCATTTATGTAAGAAAGAGTTTGT
AAGACACTCTTAAAGTATCATATCAAGGAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK363357	2012	0.0	343 - 1989	99	1642 / 1647	CUST_9795_PI390587928 CUST_5043_PI390587928	ABC04592 ABC04593
MLOC_32468.1	1607	0.0	16 - 1503	99	1485 / 1488	CUST_5043_PI390587928	ABC04592 ABC04593
MLOC_12765.1	1929	0.0	470 - 1765	85	1105 / 1297	None	ABC04592 ABC04593
AK371805	2140	1e-69	552 - 1091	76	418 / 550	CUST_41050_PI390587928 CUST_12204_PI390587928	ABC04593 ABC07135 ABC11168 ABC15997 ABC23641
MLOC_43400.1	1908	1e-69	283 - 822	76	418 / 550	CUST_41050_PI390587928 CUST_12204_PI390587928	ABC04593 ABC07135 ABC11168 ABC15997 ABC23641
MLOC_7568.1	1366	2e-63	927 - 1355	77	332 / 430	None	ABC04593
AK374710	1894	6e-63	621 - 1019	78	311 / 400	None	ABC04593
MLOC_7568.2	1341	1e-60	911 - 1313	77	313 / 404	None	ABC04593