barSeed - Barley Seed Development Database

Probe ABC15997

Source Contig ABC15997

barSeed

Links

Affymetrix Source Sequence (1414 bp)

>ABC15997 1414
TCGCCAGGGGACACTACACGGAGCGCGCCGCCGCCAACGTCACCCGCACCATCGTCGAGG
TCGTGCAGCTCTGCCACCGACACGGCGTCATCCACCGGGACCTCAAGCCAGAGAACTTCC
TCTTCGCCAACAAGAAGGAGAACTCGCCGCTCAAGGCCATCGATTTCGGCCTCTCCATTT
TCTTCAAGCCCGGTGAAAAGTTTTCAGAAATTGTCGGAAGCCCTTATTACATGGCTCCTG
AAGTATTGAAGAGAAACTATGGACCGGAAATAGACATCTGGAGTGCCGGGGTTATCTTAT
ATATTTTACTATGTGGAGTTCCTCCATTTTGGGCTGAGACCGAACAAGGGGTAGCACAAG
CTATTCTTCGTGGAAATATCGATTTTAAGCGGGAACCCTGGCCTAATGTATCGGAAAATG
CTAAAGATTTAGTTCGACGTATGTTGGAACCAGATCCAAAGCTCAGGTTAACTGCAAAGC
AGGTTCTCGAGCACCATTGGCTTCAAAATGCTAAGAAAGCTCCAAATGTTCCTCTTGGAG
ATATTGTCAAGTCAAGGCTTAAGCAATTTTCGAGGATGAATAGATTCAAAAGAAGAGCTC
TAAGAGTCATCGCTGATCATTTGTCTGCTGAGGAAGTTGAGGACATAAAGGAGATGTTCA
AGGCAATGGATACGGACAATGATGGAATTGTCTCTTGTGAAGAATTGAAGAGTGGGATAG
CAAAATTTGGCTCTCACCTTGCAGAATCGGAAGTGCAGATGCTTATTGAAGCTGTGGATA
CAAATGGCAAAGGAGTACTAGATTATGCGGAATTTCTAGCCGTGTCTCTTCATCTGCAAA
GGATGGCAAATGACGAGCACCTTCGGCGGGCCTTCTTATTCTTCGACAAGGATGGCAATG
GTTACATTGAGCCGGACGAGCTTCGTGAGGCTCTGAAGGACGATGGGGCAGCTGATAGCA
TGGAAGTTGTGAATGACATACTGCAAGAAGTTGACACCGATAAGGATGGCAAAATTAGCT
ATGACGAATTCGTGGCGATGATGAAGACGGGCACGGACTGGCGAAAGGCATCACGGCATT
ATTCGAGAGGAAGATTCAACAGCCTTAGCATGAAGCTTGTGAAGGACGGGTCCGTCAAAT
TGGGCGTGGAGTAAAAGGCATGGTGTTTATTTGTGCATGTAGTAGTTAGGCATTTGGGCC
CACTAGGCAGCAGCTCCTTTTAGTTTTTCTCATGGTCGTTTTGTGTGGAAATTTAGATAG
GTGGAACCCCATCACCCCTGATTGGCTTACATGTGTAATTAGTTCTCCTGGGTCACTGGC
AATCGCGCCTGCTTTTTGAACTACTGATGCTAAGTGTTGTACAATGTTTTGCCGTACACA
AATACAGTTTTTAGTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK371805	2140	0.0	749 - 2138	99	1389 / 1390	CUST_41050_PI390587928 CUST_12204_PI390587928	ABC04593 ABC07135 ABC11168 ABC15997 ABC23641
MLOC_43400.1	1908	0.0	480 - 1877	99	1394 / 1398	CUST_41050_PI390587928 CUST_12204_PI390587928	ABC04593 ABC07135 ABC11168 ABC15997 ABC23641
AK354090	1407	0.0	7 - 854	85	719 / 850	CUST_12368_PI390587928 CUST_41109_PI390587928	ABC15997 ABC23641
MLOC_67785.1	1668	0.0	402 - 1042	85	546 / 642	CUST_41109_PI390587928	ABC15997 ABC23641
MLOC_19618.1	864	1e-158	380 - 860	88	422 / 481	None	ABC07135 ABC11168 ABC15997
MLOC_19618.2	864	1e-158	380 - 860	88	422 / 481	None	ABC07135 ABC11168 ABC15997
AK365058	2077	9e-56	628 - 992	78	286 / 368	CUST_8154_PI390587928	ABC07135 ABC11168 ABC15997
MLOC_37356.4	1545	9e-56	127 - 491	78	286 / 368	None	ABC07135 ABC15997
MLOC_37356.1	1568	9e-56	451 - 815	78	286 / 368	None	ABC07135 ABC11168 ABC15997
MLOC_37356.3	1668	9e-56	303 - 667	78	286 / 368	None	ABC07135 ABC11168 ABC15997
MLOC_37356.2	1897	9e-56	451 - 815	78	286 / 368	CUST_8154_PI390587928	ABC07135 ABC11168 ABC15997